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AT3G15470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G54200.1); Has 35932 Blast hits to 22007 proteins in 749 species: Archae - 56; Bacteria - 5680; Metazoa - 13723; Fungi - 7656; Plants - 4267; Viruses - 6; Other Eukaryotes - 4544 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQPJeggNOG:KOG0283EMBL:AB022218EMBL:AC024081
EMBL:AF372960EMBL:AY081717EMBL:CP002686EnsemblPlants:AT3G15470
EnsemblPlants:AT3G15470.1entrez:820786Gene3D:2.130.10.10GeneID:820786
Gramene:AT3G15470.1hmmpanther:PTHR14221hmmpanther:PTHR14221:SF0HOGENOM:HOG000239143
InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986InterPro:IPR019775
InterPro:IPR020472KEGG:ath:AT3G15470OMA:GMASTENPfam:PF00400
Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q9LDG7PRINTS:PR00320
PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294Proteomes:UP000006548
RefSeq:NP_566515.1scanprosite:PS00678SMART:SM00320SMR:Q9LDG7
STRING:3702.AT3G15470.1SUPFAM:SSF50978TAIR:AT3G15470UniGene:At.11977
UniGene:At.48664UniProt:Q9LDG7
Coordinates (TAIR10) chr3:-:5216630..5219868
Molecular Weight (calculated) 97418.70 Da
IEP (calculated) 7.11
GRAVY (calculated) -0.67
Length 883 amino acids
Sequence (TAIR10)
(BLAST)
001: MSYQNEEEEE GGDTNDCFYE SLDRLASSSS CSCSASNSDY DSESSPRISS AASHDSEELY GGGRRRRYPF PVPRFPMGAS KFDVWTSEPA SVSERRSKLL
101: NEMGLSRDPV LSRLKPVSDS SSSKDTGAAG FEISRSISCN QLARRDHGEC SESVGGCASC IVRSKSDITT SQCGDRDRRY TSPGNPCSCS VSKLSVHHSS
201: HSEISRTSSP FVNCSVGSVS ADSLRLNGDS DCVLRESVVN EEVEVCTIKN LDNGKEFVVN EIQEDGTWKK VKEVGTGTQM TMEEFEMCVG HSPIVQELMR
301: RQNVEDSDKN TSKENEDSGN SNKDNASKSK KKGSWFKSIK SVASSMTGHS KERRSSDDRD TSSERGGRRS SSATDDSQES SFHGPERVRV RQYGKSSKEL
401: TALYKTQEIQ AHNGSIWSIK FSLDGKYLAS AGEDCIIHIW QVVEAEKKGE LLLDRPELLL LATNGSPEPT TMSPRRRGRT SISRKSLSLE NIFVPDSLFG
501: LSEKPFCSFQ GHVDDVLDLA WSKSQHLLSS SMDKTVRLWN LSSQTCLKVF SHSDYVTCIQ FNPVDDRYFI SGSLDAKVRV WSIPDRQVVD WYDLHEMVTS
601: ACYTPDGQGV LVGSYKGSCR MYSASDNKLQ QKSQINLQNK KKKAHQKKIT GFQFVPGSSS EVLVTSSDSR IRVVDGTDLV NKLKGFRNTS SQISASITAD
701: GKYVVSASED SHVYIWKYES PASRPSRSNN NKNVTVTNSY EHFHSQDVSA AISWPGMAST ENWGTQNRAG FNGSTNNLDN ISTANHPPTP VDQLGTVERL
801: NSPRNGIISS ATNGYFFDRM SATWPEEKLL FARNRSGNRL STDMSSSNGN SGNVSASWGM VIVTAGLRGE IRTFQNFGLP IRI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)