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AT5G11440.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.742
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : CTC-interacting domain 5
Curator
Summary (TAIR10)
Interacts with PAB (poly A binding protein) in yeast two hybrid experiments. Contains PAM2 motif, a PABC interacting domain.
Computational
Description (TAIR10)
CTC-interacting domain 5 (CID5); CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 6 (TAIR:AT5G25540.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:16293eggNOG:ENOG410J2H1eggNOG:ENOG41114K2EMBL:AL163815
EMBL:AY735675EMBL:AY773894EMBL:CP002688EnsemblPlants:AT5G11440
EnsemblPlants:AT5G11440.1entrez:831015GeneID:831015Gramene:AT5G11440.1
hmmpanther:PTHR37252hmmpanther:PTHR37252:SF1HOGENOM:HOG000143368InParanoid:Q9LYE5
IntAct:Q9LYE5InterPro:IPR003892KEGG:ath:AT5G11440OMA:SEMAYKQ
PaxDb:Q9LYE5Pfam:Q9LYE5Pfscan:PS51140PhylomeDB:Q9LYE5
PIR:T48503PRIDE:Q9LYE5PRO:PR:Q9LYE5PROSITE:PS51140
ProteinModelPortal:Q9LYE5Proteomes:UP000006548RefSeq:NP_196705.1SMR:Q9LYE5
STRING:3702.AT5G11440.1TAIR:AT5G11440tair10-symbols:CID5tair10-symbols:IPD1
UniGene:At.51054UniGene:At.73156UniProt:Q9LYE5
Coordinates (TAIR10) chr5:-:3653060..3653607
Molecular Weight (calculated) 16561.20 Da
IEP (calculated) 3.77
GRAVY (calculated) -0.22
Length 155 amino acids
Sequence (TAIR10)
(BLAST)
001: MKPGAFALNP HAASYVPISK RVDYGGGDDG LVFAAKSPTV EVSMPKKSSE MAYKQIRDDD LDLEMDIDMD IEYLLVTFSG LSQESITDVY LANGGDLEAT
101: IEMLNQLEIY STESEENLPE TLDIGDISES GPSTSKSTEV AASTSSVIPN APVSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)