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AT2G43970.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNA-binding protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: ribonucleoprotein complex, nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Lupus La protein (InterPro:IPR002344); BEST Arabidopsis thaliana protein match is: RNA-binding protein (TAIR:AT3G19090.1); Has 5436 Blast hits to 4197 proteins in 373 species: Archae - 4; Bacteria - 353; Metazoa - 1802; Fungi - 477; Plants - 426; Viruses - 18; Other Eukaryotes - 2356 (source: NCBI BLink).
Protein Annotations
BioGrid:4338eggNOG:ENOG4110VUAeggNOG:KOG1855EMBL:AC004005
EMBL:AF332565EMBL:AF367277EMBL:AF375410EMBL:AF412052
EMBL:AK319109EMBL:AY056238EMBL:AY129474EMBL:CP002685
EnsemblPlants:AT2G43970EnsemblPlants:AT2G43970.1EnsemblPlants:AT2G43970.2entrez:819002
ExpressionAtlas:O80567Gene3D:1.10.10.10Gene3D:3.30.70.330GeneID:819002
Genevisible:O80567GO:GO:0000166GO:GO:0003723GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0006396GO:GO:0030529
hmmpanther:PTHR22792hmmpanther:PTHR22792:SF52HOGENOM:HOG000244026InParanoid:O80567
IntAct:O80567InterPro:IPR002344InterPro:IPR006630InterPro:IPR011991
InterPro:IPR012677KEGG:ath:AT2G43970KO:K15191OMA:KREQPFT
PaxDb:O80567Pfam:O80567Pfam:PF05383Pfscan:PS50961
PhylomeDB:O80567PIR:T00677PRIDE:O80567PRINTS:PR00302
PRO:PR:O80567PROSITE:PS50961ProteinModelPortal:O80567Proteomes:UP000006548
RefSeq:NP_566004.1RefSeq:NP_850406.1SMART:SM00715SMR:O80567
STRING:3702.AT2G43970.1SUPFAM:SSF46785SUPFAM:SSF54928TAIR:AT2G43970
UniGene:At.20070UniGene:At.20914UniGene:At.74750UniGene:At.74872
UniGene:At.74992UniProt:O80567
Coordinates (TAIR10) chr2:-:18205535..18208031
Molecular Weight (calculated) 60592.50 Da
IEP (calculated) 8.19
GRAVY (calculated) -1.06
Length 545 amino acids
Sequence (TAIR10)
(BLAST)
001: MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA
401: DVEHEEDDAT TSEQQPIEKQ SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ NHNHNGRGNH HHHHHHQVGT
501: QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV MVQAE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)