AT1G02120.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GRAM domain family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes VAD1 (Vascular Associated Death1), a regulator of cell death and defense responses in vascular tissues. VAD1 is a putative membrane associated protein and contains a GRAM domain. vad1 is a lesion mimic mutant that exhibits light conditional appearance of propagative HR (hypersensitive response)-like lesions along the vascular system. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
VASCULAR ASSOCIATED DEATH1 (VAD1); INVOLVED IN: defense response to bacterium, negative regulation of programmed cell death; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein / GRAM domain-containing protein (TAIR:AT3G59660.1); Has 1155 Blast hits to 1034 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 619; Fungi - 222; Plants - 157; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:395761..399720 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67705.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.25 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 598 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAMLSTASVS GSVDLPRGTM KVDSSASPEV VSDLPPSSPK GSPDRHDPST SSPSPSRGGD NQSEVISKSE EYRQLFRLPA DEILVQDFNC ACQESILMQG 101: HMYLFIHYIC FYSNIFGYET KKIIPFAEIS CVKRAKTAGI FPNAIEILAG GKKYFFASFL SRDEAFKLIH DGWLEYGSAV KSEGEILVTE PQVSDGVVKR 201: ARSSMDLANE LDIPVRDETL HLSSSSSLPV ISQNGVPPSS VQRHAEPDVD VVAANTFNWK PEDTDAPKLS SDFTKVAEAK FSIPVEEFFR LFFSDGAVSF 301: VESFHKNCGD KEFRCTSWQP HEKLGHTRNV SFQHPIKIYF GAKFGGCQES QKFRMYRNSH LVIETSQEIS DVPYADYFTV EGVWDLKRDC RDSVEGCILD 401: VYVNVAFSKR TVWKGKIVQS TLEECREAYA HWIRMAHELL KQKKLENQEG NKLIEDGEPL AAREERVSEC DEEGKVEMVG EGVVKKSLKE AWVNLTSFVK 501: RQSGTRQVIV LAFAVILLMQ VTIVVLLKKG GGGQVEYHER YDEYSVNGET LGWLEKRMHF LREEMMMVED RLQRMRQDHA ALKAQFHHLE RLLRRNKQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)