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AT2G23980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cyclic nucleotide-gated channel 6
Curator
Summary (TAIR10)
member of Cyclic nucleotide gated channel family
Computational
Description (TAIR10)
cyclic nucleotide-gated channel 6 (CNGC6); FUNCTIONS IN: calmodulin binding; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: cyclic nucleotide gated channel 9 (TAIR:AT4G30560.1); Has 3569 Blast hits to 3382 proteins in 249 species: Archae - 0; Bacteria - 42; Metazoa - 1579; Fungi - 32; Plants - 1028; Viruses - 0; Other Eukaryotes - 888 (source: NCBI BLink).
Protein Annotations
BioGrid:2283eggNOG:ENOG410XPSEeggNOG:KOG0498EMBL:AC005170
EMBL:CP002685EMBL:Y17914EnsemblPlants:AT2G23980EnsemblPlants:AT2G23980.1
entrez:816931EvolutionaryTrace:O82226Gene3D:2.60.120.10GeneID:816931
Genevisible:O82226GO:GO:0005223GO:GO:0005249GO:GO:0005886
GO:GO:0016021GO:GO:0030552GO:GO:0030553GO:GO:0042391
GO:GO:0046686GO:GO:0071805GO:GO:0071944GO:GO:0098655
Gramene:AT2G23980.1hmmpanther:PTHR10217hmmpanther:PTHR10217:SF500HOGENOM:HOG000238338
InParanoid:O82226InterPro:IPR000048InterPro:IPR000595InterPro:IPR003938
InterPro:IPR005821InterPro:IPR014710InterPro:IPR018490KEGG:ath:AT2G23980
KO:K05391MINT:MINT-8059780ncoils:CoilOMA:TKELVKF
PaxDb:O82226PDB:1WGPPDBsum:1WGPPfam:O82226
Pfam:PF00520Pfscan:PS50042Pfscan:PS50096PhylomeDB:O82226
PIR:B84631PIR:T52572PRIDE:O82226PRINTS:PR01463
PRO:PR:O82226PROSITE:PS50042PROSITE:PS50096ProteinModelPortal:O82226
Proteomes:UP000006548Reactome:R-ATH-2485179Reactome:R-ATH-2514859Reactome:R-ATH-5620916
RefSeq:NP_565560.1SMART:SM00100SMR:O82226STRING:3702.AT2G23980.1
SUPFAM:SSF51206SUPFAM:SSF81324TAIR:AT2G23980tair10-symbols:ATCNGC6
tair10-symbols:CNGC6TCDB:1.A.1.5.14TMHMM:TMhelixUniGene:At.402
UniProt:O82226
Coordinates (TAIR10) chr2:-:10201276..10204011
Molecular Weight (calculated) 85445.50 Da
IEP (calculated) 9.65
GRAVY (calculated) -0.17
Length 747 amino acids
Sequence (TAIR10)
(BLAST)
001: MFDTCGPKGV KSQVISGQRE NFVRLDSMDS RYSQSSETGL NKCTLNIQGG PKRFAQGSKA SSGSFKKGFR KGSEGLWSIG RSIGLGVSRA VFPEDLEVSE
101: KKIFDPQDKF LLLCNKLFVA SCILAVSVDP LFLYLPFIND KAKCVGIDRK LAIIVTTIRT VIDSFYLFHM ALRFRTAYVA PSSRVFGRGE LVIDPAQIAK
201: RYLQQYFIID LLSVLPVPQI IVWRFLYTSR GANVLATKQA LRYIVLVQYI PRFLRMYPLS SELKRTAGVF AETAWAGAAY YLLLYMLASH IVGALWYLLA
301: LERNNDCWSK ACHNNQNCTR NFLFCGNQNM KGYAAWDNIK VSYLQLKCPV NVPEDEEPPF DFGIYLRALS SGIVSSKNFV SKYFFCLWWG LQNLSTLGQG
401: LETSTYPGEV IFSITLAIAG LLLFALLIGN MQTYLQSLTI RLEEMRVKRR DSEQWMHHRM LPPELRERVR RYDQYKWLET RGVDEENLVQ NLPKDLRRDI
501: KRHLCLALVR RVPLFENMDE RLLDAICERL KPCLFTEKSY LVREGDPVNE MLFIIRGRLE SVTTDGGRSG FYNRSLLKEG DFCGDELLTW ALDPKSGSNL
601: PSSTRTVKAL TEVEAFALIA DELKFVASQF RRLHSRQVQH TFRFYSQQWR TWAACFMQAA WRRYIKRKKL EQLRKEEEEE EAAAASVIAG GSPYSIRATF
701: LASKFAANAL RSVHKNRTAK STLLLSSTKE LVKFQKPPEP DFSAEDH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)