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AT1G34320.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.798
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF668)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF668); INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF668 (InterPro:IPR007700), Protein of unknown function DUF3475 (InterPro:IPR021864); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF668) (TAIR:AT5G08660.1); Has 339 Blast hits to 273 proteins in 21 species: Archae - 0; Bacteria - 1; Metazoa - 3; Fungi - 0; Plants - 335; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGR9eggNOG:ENOG410Y9AYEMBL:AK176401EMBL:AK176473
EMBL:BT010615EMBL:CP002684EnsemblPlants:AT1G34320EnsemblPlants:AT1G34320.1
entrez:840333GeneID:840333GO:GO:0005886Gramene:AT1G34320.1
hmmpanther:PTHR31730hmmpanther:PTHR31730:SF2HOGENOM:HOG000029557IntAct:Q6NQ48
InterPro:IPR007700InterPro:IPR021864KEGG:ath:AT1G34320ncoils:Coil
OMA:FASERTPPfam:PF05003Pfam:PF11961PhylomeDB:Q6NQ48
Proteomes:UP000006548RefSeq:NP_174692.1STRING:3702.AT1G34320.1TAIR:AT1G34320
UniGene:At.39760UniProt:Q6NQ48
Coordinates (TAIR10) chr1:+:12520713..12524046
Molecular Weight (calculated) 72844.80 Da
IEP (calculated) 9.59
GRAVY (calculated) -0.50
Length 657 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGLCSRSSS VNNAPGGTFA HVNGHHLNNN ASDLNSHSGE SGLKDDPSPV TENVDDNKHT SESFSFPIVS SGSHPQNIED GIPRLSRVLS QKSRSTKSRQ
101: AAVAKVSEVS SLLGRAGTMG LGKAVDVLDT LGSSMTNLNL SGGFSSATTV KGNKISILSF EVANTIVKGA NLMHSLSKDS ITHLKEVVLP SEGVQNLISK
201: DMDELLRIAA ADKREELRIF SGEVVRFGNR CKDPQYHNLD RFFDRLGSEF TPQKHLKQEA ETIMHQMMSF VHFTADLYHE LHALDRFEQD YQRKIQEEEN
301: PSTAQRGVGD TLAILRTELK SQKKHVRNLK KKSLWSRILE EVMEKLVDVV HFLHLEIHEA FGGADPDKPA NDPPINHKKL GSAGLALHYA NIITQIDTLV
401: SRSSTMPAST RDALYQGLPP SIKSALRSRI QSFQVKEELT VPQIKAEMEK TLQWLVPVAT NTTKAHHGFG WVGEWASSGS EANQRPAGQT ILRIDTLHHA
501: DKEKTEAYIL DLVVWLHHLV TQVRATTGYG LRSPVKSPIR SPNQKTIQLS SGSHNPSMGL PLLTTEDQEM LRDVSKRRKT PGISKSQEFE TVAKARLCKH
601: HRLSKSSSHS PMMGEMMKNK KDTFSTRRPS SVPIIDFDID RMKALDVIDR VDTIRSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)