AT5G26880.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : AGAMOUS-like 26 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Root Specific | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
AGAMOUS-like 26 (AGL26); FUNCTIONS IN: RNA binding, sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity, RNA methyltransferase activity; INVOLVED IN: regulation of transcription, DNA-dependent, RNA processing; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537), Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 89 (TAIR:AT5G27580.1); Has 6012 Blast hits to 6012 proteins in 2123 species: Archae - 0; Bacteria - 4418; Metazoa - 4; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1549 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:9457301..9459190 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41567.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.26 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 368 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESCCRSVIA SRTFHLRSSG RLFPSLSLTH LKGKLSLSIN SFSSKIQSHA LRGVGIGESD KKNPLPRGAG EGVKEDARSK LLHVVLVSPQ IPGNTGCIAR 101: TCAASAVGLH LVGPLGFQVD DARVKRAGLD YWPFVVVKAH SSWAEFQEYF RLQEGEKRMI AFTKRGTRIH SDFSYRSGDY LLFGSETSGL PPEALSDCNH 201: EPYGGGTLRI PMVETYVRCL NLSILRCQEE NQIFCEKKPN LSMREDTMFK KALELSTLCD IEVCVILYSR DGELIKTWPE DQSKVRDMAE RFSKLHERER 301: RKKRTNLSLF LRKKILDNSK LSEKVLEMKD SLESGLRVLQ DKLLLLQPEK NQTELGQIPV INNGQNHW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)