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AT3G59980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31911558 (2020): mitochondrion
  • PMID:31871212 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:20423899 (2010): plastid
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleic acid-binding, OB-fold-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: tRNA binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), tRNA-binding domain (InterPro:IPR002547); BEST Arabidopsis thaliana protein match is: methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (TAIR:AT4G13780.1); Has 5867 Blast hits to 5867 proteins in 2108 species: Archae - 266; Bacteria - 4355; Metazoa - 277; Fungi - 157; Plants - 151; Viruses - 0; Other Eukaryotes - 661 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0073eggNOG:KOG2241EMBL:AL138647EMBL:AY045920
EMBL:AY086812EMBL:AY113866EMBL:CP002686EnsemblPlants:AT3G59980
EnsemblPlants:AT3G59980.1entrez:825168Gene3D:2.40.50.140GeneID:825168
GO:GO:0000049GO:GO:0009507Gramene:AT3G59980.1hmmpanther:PTHR11586
hmmpanther:PTHR11586:SF18HOGENOM:HOG000153226InterPro:IPR002547InterPro:IPR012340
KEGG:ath:AT3G59980OMA:WQHEEADPfam:PF01588Pfscan:PS50886
PhylomeDB:Q9M1X8PIR:T47822PROSITE:PS50886Proteomes:UP000006548
RefSeq:NP_191557.1SMR:Q9M1X8STRING:3702.AT3G59980.1SUPFAM:SSF50249
SwissPalm:Q9M1X8TAIR:AT3G59980UniGene:At.1168UniGene:At.72842
UniProt:Q9M1X8
Coordinates (TAIR10) chr3:-:22154528..22155570
Molecular Weight (calculated) 29746.70 Da
IEP (calculated) 8.07
GRAVY (calculated) -0.25
Length 273 amino acids
Sequence (TAIR10)
(BLAST)
001: MAATIAVFTG GLKVKAGVLA VQISSLPLRR EFPRYLSSSS RRTVAAISSS LRVSAVYNHQ QRNRSSWPRV ATFCTAAPDA GTTVSADESE KKSESQKEEE
101: NVKETANLLD IKVGRIVKAW QHEEADSLYV EEVDIGEAEP RIICSGLVKY VPLDLLQGAS VVVLANLKPR NMRGVKSCGM LLAASDAAHE NVELLVPPEG
201: SVPGDRVWFG NEEDLEQLPE PAPPNKVQKK KMWELVQPLL KTDASGVSML KEHLMRTSSG LVTSKSLRNA NIS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)