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AT3G60210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:24124904 (2013): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GroES-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GroES-like family protein; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn10 (InterPro:IPR020818), GroES-like (InterPro:IPR011032), Chaperonin Cpn10, subgroup (InterPro:IPR001476); BEST Arabidopsis thaliana protein match is: chloroplast chaperonin 10 (TAIR:AT2G44650.1); Has 3302 Blast hits to 3296 proteins in 900 species: Archae - 7; Bacteria - 1960; Metazoa - 11; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 1153 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0234eggNOG:KOG1641EMBL:AK228307EMBL:AL138658
EMBL:AY087462EMBL:BT005842EMBL:CP002686EnsemblPlants:AT3G60210
EnsemblPlants:AT3G60210.1entrez:825191Gene3D:2.30.33.40GeneID:825191
GO:GO:0005737GO:GO:0006457Gramene:AT3G60210.1hmmpanther:PTHR10772
hmmpanther:PTHR10772:SF13HOGENOM:HOG000133897IntAct:Q9M1C2InterPro:IPR011032
InterPro:IPR020818KEGG:ath:AT3G60210KO:K04078OMA:KWEPAKV
PANTHER:PTHR10772Pfam:PF00166PhylomeDB:Q9M1C2PIR:T47845
PRINTS:PR00297Proteomes:UP000006548RefSeq:NP_191580.1SMART:SM00883
SMR:Q9M1C2STRING:3702.AT3G60210.1SUPFAM:SSF50129TAIR:AT3G60210
UniGene:At.43927UniProt:Q9M1C2
Coordinates (TAIR10) chr3:-:22251443..22252709
Molecular Weight (calculated) 15141.40 Da
IEP (calculated) 8.21
GRAVY (calculated) -0.01
Length 138 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSFITVPK PFLSFPIKTN APTLPQQTLL GIRRNSFRIN AVSTKWEPAK VVPQADRVLV RLEVLPEKSS GGVLLPKSAV KFERYLTGEV VSVGSEVGEV
101: EPGKKVLFSD MSAYEVDFGT EDAKHCFCKE SDLLAIVQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)