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AT4G39460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : S-adenosylmethionine carrier 1
Curator
Summary (TAIR10)
Encodes a plastid metabolite transporter required for the import of S-Adenosylmethionine from the cytosol. Impaired function of SAMT1 led to decreased accumulation of prenyllipids and mainly affected the chlorophyll pathway.
Computational
Description (TAIR10)
S-adenosylmethionine carrier 1 (SAMC1); FUNCTIONS IN: S-adenosylmethionine transmembrane transporter activity, binding; INVOLVED IN: transport, chloroplast organization, mitochondrial transport, S-adenosylmethionine transport; LOCATED IN: mitochondrion, mitochondrial inner membrane, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine carrier 2 (TAIR:AT1G34065.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4110BIIeggNOG:KOG0768EMBL:AJ627908EMBL:AL078620
EMBL:AL161595EMBL:AM260490EMBL:AY046052EMBL:AY079349
EMBL:CP002687EnsemblPlants:AT4G39460EnsemblPlants:AT4G39460.1EnsemblPlants:AT4G39460.2
entrez:830101Gene3D:1.50.40.10GeneID:830101Genevisible:Q94AG6
GO:GO:0000095GO:GO:0003735GO:GO:0005739GO:GO:0006412
GO:GO:0009507GO:GO:0009536GO:GO:0009658GO:GO:0009941
GO:GO:0015805GO:GO:0016021GO:GO:0031966GO:GO:0031969
GO:GO:1901962Gramene:AT4G39460.1Gramene:AT4G39460.2hmmpanther:PTHR24089
hmmpanther:PTHR24089:SF369HOGENOM:HOG000038810InParanoid:Q94AG6IntAct:Q94AG6
InterPro:IPR002067InterPro:IPR018108InterPro:IPR023395KEGG:ath:AT4G39460
KO:K15111OMA:GAYDRTHPaxDb:Q94AG6Pfam:PF00153
Pfam:Q94AG6Pfscan:PS50920PhylomeDB:Q94AG6PIR:T09362
PRIDE:Q94AG6PRINTS:PR00926PRO:PR:Q94AG6PROSITE:PS50920
ProteinModelPortal:Q94AG6Proteomes:UP000006548RefSeq:NP_001190968.1RefSeq:NP_568060.1
SMR:Q94AG6STRING:3702.AT4G39460.1SUPFAM:0048588SUPFAM:SSF103506
TAIR:AT4G39460tair10-symbols:SAMC1tair10-symbols:SAMT1TCDB:2.A.29.18.2
TMHMM:TMhelixUniGene:At.21435UniProt:Q94AG6
Coordinates (TAIR10) chr4:-:18356093..18358596
Molecular Weight (calculated) 34863.50 Da
IEP (calculated) 10.22
GRAVY (calculated) 0.10
Length 325 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPLTLSVDV KSSSATSHDV SKRVMQSSQL KINKGFFASV NTQEDKPFDF FRTLFEGFIA GGTAGVVVET ALYPIDTIKT RLQAARGGGK IVLKGLYSGL
101: AGNIAGVLPA SALFVGVYEP TKQKLLKTFP DHLSAVAHLT AGAIGGLAAS LIRVPTEVVK QRMQTGQFTS APSAVRMIAS KEGFRGLYAG YRSFLLRDLP
201: FDAIQFCIYE QLCLGYKKAA RRELSDPENA LIGAFAGALT GAVTTPLDVI KTRLMVQGSA KQYQGIVDCV QTIVREEGAP ALLKGIGPRV LWIGIGGSIF
301: FGVLESTKRT LAQRRPNTVK ETKEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)