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AT5G54600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30962257 (2019): plastid
  • PMID:30865669 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23549413 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Translation protein SH3-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Translation protein SH3-like family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: chloroplast stroma, chloroplast, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), KOW (InterPro:IPR005824), Ribosomal protein L24 (InterPro:IPR003256), Ribosomal protein L24/L26, conserved site (InterPro:IPR005825); BEST Arabidopsis thaliana protein match is: KOW domain-containing protein (TAIR:AT5G23535.1); Has 7434 Blast hits to 7434 proteins in 2595 species: Archae - 0; Bacteria - 5337; Metazoa - 128; Fungi - 18; Plants - 114; Viruses - 0; Other Eukaryotes - 1837 (source: NCBI BLink).
Protein Annotations
BioGrid:20793eggNOG:COG0198eggNOG:KOG1708EMBL:AB016879
EMBL:AY086810EMBL:BT001990EMBL:BT006573EMBL:CP002688
EMBL:Y09635EnsemblPlants:AT5G54600EnsemblPlants:AT5G54600.1entrez:835549
ExpressionAtlas:P92959Gene3D:2.30.30.30GeneID:835549Genevisible:P92959
GO:GO:0003735GO:GO:0005840GO:GO:0009507GO:GO:0009570
GO:GO:0009941GO:GO:0019843GO:GO:0032544HAMAP:MF_01326_B
hmmpanther:PTHR12903hmmpanther:PTHR12903:SF1HOGENOM:HOG000039891InParanoid:P92959
InterPro:IPR003256InterPro:IPR005824InterPro:IPR005825InterPro:IPR008991
InterPro:IPR014722iPTMnet:P92959OMA:KICPIEMPaxDb:P92959
Pfam:P92959Pfam:PF00467Pfam:PF17136PhylomeDB:P92959
PRIDE:P92959PRO:PR:P92959PROSITE:PS01108ProteinModelPortal:P92959
Proteomes:UP000006548RefSeq:NP_851190.1scanprosite:PS01108SMART:SM00739
SMR:P92959STRING:3702.AT5G54600.1SUPFAM:SSF50104TAIR:AT5G54600
TIGRfam:TIGR01079TIGRFAMs:TIGR01079UniGene:At.47267UniProt:P92959
Coordinates (TAIR10) chr5:+:22183046..22184403
Molecular Weight (calculated) 21977.90 Da
IEP (calculated) 10.42
GRAVY (calculated) -0.32
Length 198 amino acids
Sequence (TAIR10)
(BLAST)
001: MATMSALQSS FTSLSLSPSS SFLGQRLISP ISLSVTSPVK PAENPCLVLA KLKRWERKEC KPNSLPILHK MHVKFGDTVK VISGRDKGKI GEVTKIFTHN
101: STIVIKDVNL KTKHMKSREE GEPGQIVKIE APIHSSNVML YSKEKDVVSR VGHKVLEDGQ KVRYLIKTGE LIDTIEKWKL LKEAKDKETT QVAVTSAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)