suba logo
AT1G75350.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27177187 (2016): nucleus
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L31
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 2184 (emb2184); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis, embryo development ending in seed dormancy; LOCATED IN: ribosome, chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L31 (InterPro:IPR002150); Has 1009 Blast hits to 1009 proteins in 370 species: Archae - 0; Bacteria - 720; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 230 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0254eggNOG:ENOG410IZAPEMBL:AC023754EMBL:AF370226
EMBL:AY059118EMBL:AY087711EMBL:CP002684EnsemblPlants:AT1G75350
EnsemblPlants:AT1G75350.1entrez:843871EvolutionaryTrace:Q9FWS4GeneID:843871
Genevisible:Q9FWS4GO:GO:0003735GO:GO:0005840GO:GO:0006412
GO:GO:0009507GO:GO:0009570GO:GO:0009941GO:GO:0019843
Gramene:AT1G75350.1hmmpanther:PTHR33280hmmpanther:PTHR33280:SF1HOGENOM:HOG000284895
InParanoid:Q9FWS4InterPro:IPR002150KEGG:ath:AT1G75350KO:K02909
OMA:CRKKDIHPaxDb:Q9FWS4Pfam:PF01197Pfam:Q9FWS4
PhylomeDB:Q9FWS4PIR:A96784PRIDE:Q9FWS4PRINTS:PR01249
PRO:PR:Q9FWS4ProteinModelPortal:Q9FWS4Proteomes:UP000006548RefSeq:NP_565109.1
SMR:Q9FWS4STRING:3702.AT1G75350.1SUPFAM:SSF143800TAIR:AT1G75350
tair10-symbols:emb2184TIGRfam:TIGR00105TIGRFAMs:TIGR00105UniGene:At.23653
UniProt:Q9FWS4
Coordinates (TAIR10) chr1:+:28272163..28272687
Molecular Weight (calculated) 16033.80 Da
IEP (calculated) 10.48
GRAVY (calculated) -0.38
Length 144 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVSLPNSFL QISPCVPSLQ LRKPVMAAVK GGKQSVRRSS NTVVQITCRK KELHPEFHED AKVYCNGELV MTTGGTKKEY VVDVWSGNHP FYLGNRSALM
101: VDADQVEKFR KRFAGLSEIM EIPVLKGEII MPTKKSKGPK GKKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)