AT1G52240.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RHO guanyl-nucleotide exchange factor 11 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily . | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RHO guanyl-nucleotide exchange factor 11 (ROPGEF11); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512), Dynein light chain, type 1/2 (InterPro:IPR001372); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 13 (TAIR:AT3G16130.1); Has 1099 Blast hits to 1098 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 490; Fungi - 40; Plants - 487; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:19455766..19459235 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68686.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.97 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 607 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLEGKAMVED SDMPVKMQMQ AMAFASQALD LFDVFDCKSI AGHIKKEFDE RYGSGWQCVA LLLLNYTTLI MGMPKLREEV DFNDNMNENS ASRHVKSWSS 101: DCAMRMDGSD NLDDDDNDMM MFRSQPGKCG SVDRPSLPIG GVTPNRNDKL PRVSSSDSME ALIILQAAME QMKEKFSKLL LGEDMSGGGK GVSSALALSN 201: AITNLAASAF GEQRRLEPMA VDRKTRWRRE IGWLISVADY IVEFAPTQQT NKDGTSMEVM STRQRTDLLC NIPALKKLDA MLLDCLDKFK DQDEFYYVKK 301: DSPDSCETRN DEKWWLPAVK VPPNGLSEIS RRFLQSQKEC VNQVLKAAMA INAQVLSEME IPESYLESLP KNGRASLGDV IYRMITVEMF DADQFLIEMD 401: LSSEHKILDL KNRIEASIVI WKRKMVQKDT KSPWGSTVSI EKREQFEERA ETILLLLKQG FPGISQSSLD ISKIQFNRDV GLAILESYSR VLESLAHTVM 501: SRIEDVLYAD QLTQEPTNNA PSKNRYSLKE NEKLREERLS FTEDMASGTL SDVMQWGNKN NEMKKESFFG DREKPLLSKV TGIMTNNKKS SYLDNLGAMR 601: SPTARYS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)