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AT1G50890.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.720
ASURE: cytoskeleton
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18577573 (2008): cytoskeleton microtubules
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT4G27060.1); Has 197 Blast hits to 187 proteins in 35 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 19; Plants - 159; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHYYeggNOG:ENOG410ZR3MEMBL:AC079284EMBL:CP002684
EnsemblPlants:AT1G50890EnsemblPlants:AT1G50890.1entrez:841511Gene3D:1.25.10.10
GeneID:841511Genevisible:F4I6M4GO:GO:0005737GO:GO:0005874
Gramene:AT1G50890.1hmmpanther:PTHR31355hmmpanther:PTHR31355:SF7HOGENOM:HOG000029994
InParanoid:F4I6M4InterPro:IPR011989InterPro:IPR016024InterPro:IPR033337
iPTMnet:F4I6M4KEGG:ath:AT1G50890ncoils:CoilOMA:LERQQTH
PANTHER:PTHR31355PaxDb:F4I6M4Pfam:F4I6M4PIR:H96545
PRIDE:F4I6M4PRO:PR:F4I6M4ProteinModelPortal:F4I6M4Proteomes:UP000006548
RefSeq:NP_175502.2SMR:F4I6M4STRING:3702.AT1G50890.1SUPFAM:SSF48371
TAIR:AT1G50890UniGene:At.37931UniProt:F4I6M4
Coordinates (TAIR10) chr1:-:18862295..18865752
Molecular Weight (calculated) 89950.00 Da
IEP (calculated) 5.20
GRAVY (calculated) -0.40
Length 821 amino acids
Sequence (TAIR10)
(BLAST)
001: MRSQTASKTS MKPSSNSSAF SVRSSVAVSS HSAMVELKQR ILTSLSRLGD RDTYQIAVDD LEKIVVSVPD SPEILPVLLH CLFDSSSDLK APVKRESIRL
101: LSFLCLSYTD LSFSQLAKII SHIVKRLKDA DNGVRDACRD AIGSLSAQFL KEKEVENGNY VGSSLVGLFA KPLFEAMAEQ NKSLQSGAAI CMGKMIDSAT
201: EPPVAAFQKL CPRISKLLNS PNYITKASLL PVVGSLSQVG AIAPQSLESL LHSIHECLGC TNWVTRKAAA DVLISLAVHS SSLVADKTDS TLTALEACRF
301: DKIKPVRESL SEALNVWKNI AGKGESGTMD DQKDVSSEQC ILERNGETDS VSCEEAGLVM QGSCDGLSSS SDSISKAVLI LRKKAPRLTG KDLNPEFFQK
401: LEKRGSGDMP VEVILPSRQK NSSNSNTEDE SDANTSVLRS RSNGLCRTAG VHTKQRHFGD FAREKWVDER MNGGESRLRA FDGDHTEVIQ ADTSENRGNW
501: PPLQRQLLHL ERQQTHIMNM LQDFMGGSHD GMISLENRVR GLERIVEEMS REMSIQSGAR GKATASWRSD VDGWDSPNYG PSSRNTQTST RKIRGTGPSE
601: QSGNSRRAWD KSSVAIRLGE GPSARSVWQA SKDEATLEAI RVAGEDCGTS RNRRVSIPEA EAMMDEDDDN RGGQQGDPIW TCWSNSVHAL RVGDTDSAFA
701: EVLSTGDDHL LVKLMDKTGP VLDQLSSDMG NEAIHSIAQF LLDHTLYDIC LSWIQQLLEV SVENGADFMG IPLELKKELL LNLHEALSTT DPPEDWEGLA
801: PDHLLVELAS NWNIEIQHFD T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)