suba logo
AT4G09630.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
golgi 0.901
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF616)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF616); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF616) (TAIR:AT1G34550.1); Has 3181 Blast hits to 2512 proteins in 288 species: Archae - 26; Bacteria - 157; Metazoa - 687; Fungi - 206; Plants - 314; Viruses - 69; Other Eukaryotes - 1722 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJI3eggNOG:ENOG410YUZVEMBL:AK229168EMBL:AL161515
EMBL:AL161831EMBL:CP002687EnsemblPlants:AT4G09630EnsemblPlants:AT4G09630.1
entrez:826549GeneID:826549GO:GO:0016021GO:GO:0016757
Gramene:AT4G09630.1hmmpanther:PTHR12956hmmpanther:PTHR12956:SF24HOGENOM:HOG000084986
InterPro:IPR006852KEGG:ath:AT4G09630OMA:WREGHEYPfam:PF04765
PhylomeDB:Q9SST1PIR:E85098Proteomes:UP000006548RefSeq:NP_192701.1
STRING:3702.AT4G09630.1TAIR:AT4G09630TMHMM:TMhelixUniGene:At.33683
UniProt:Q9SST1
Coordinates (TAIR10) chr4:+:6083860..6087802
Molecular Weight (calculated) 81274.60 Da
IEP (calculated) 6.84
GRAVY (calculated) -0.84
Length 711 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQYRQSGTE RFLGGRSGYN PYVNGGASSD HVAIGIRNGG GSNFGVVTQH GKASRWRRST RLDRNRRCGV GSLVFVLCVV LVVCVSAYYY FSGYTNFGKD
101: DKGIDTAEGD FLTNVSRTDP LKILKFGHGS VLHGRDSRDW DKDDRRRDED YNEDDVEDKS VVEERSVSEV KKDVSLRNPL KGSDWKGVGF YNEAGRDELK
201: KYEVEYQASL VKGGQSLKEN DGHHQPFDTE SNEDDSIDSH DTQGDEYVDM GHDGDENEES HKDNHKHNED GAEESHKDSH RHNEDGAEES HKETASVFLH
301: STTKHQKIEK VHGATSKRSR GKSSLLSGKS GKTSQTDAKR RARSHRFSGV SCEMKLLNSS QQIQEPLKTQ NFAAPSLQYI QMEDKPDGEE QWEPKFAGHQ
401: SLQEREDSFL VQEQKIHCGF VKAPEGLPST GFDLTEDDAN YISKCHIAVI SCIFGNSDRL RHPANKMVSS LSRKDVCFVV FVDEITMQTL SAEGQVPDGA
501: GFVGLWKLVV VRNLPYTDMR RVGKIPKLLP HRLFTSARYS IWLDSKLRLQ LDPLVILEYF LWREGHEYAI SNHYDRHCLW EEVAQNKKLN KYNHTVIDQQ
601: FEFYQSDGLT RFNASDPHKL LPSNVPEGSF IVREHTPMSN LFSCLWFNEV ERFTPRDQLS FAYTYQKLTR MNPDTPFNLH MFKDCERRKI TKLFRHRSEE
701: KRNLIQAATT Q
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)