AT2G05160.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : CCCH-type zinc fingerfamily protein with RNA-binding domain | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CCCH-type zinc fingerfamily protein with RNA-binding domain; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G52980.1); Has 286 Blast hits to 218 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 277; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:1859011..1860931 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61352.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.03 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 536 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNFTESMNVV HARIQQLEPE NAAKIFGYLL LMQENGNRDM IRLAFCPDSV MCSVINCVKY ELARNSHHYH SPPSDHIPTP KFGSFTGSSP LSVSVSPPMK 101: TGFWENSTEM DTLQNNLQFL NFEDPLTSPE FSNGFFSQER QCLPLRTSRR SPSLPEFPVK ICHYFNKGFC KHGNNCRYFH GQIIPERESF AQMFNPNNNL 201: SDEEHVVSPV SLEKLEGEII ELLKLRRGAP ISIASLPMMY YEKYGRTLQA EGYLTESQRH GKAGYSLTKL LARLKNTIRL VDRPHGQHSV ILAEDASKFV 301: EYTGERNEHG AILAGSRQIY LTFPAESSFT EHDVSIYFTS YGHVEDVRIP CQQKRMYGFV TFASSETVKH ILAKGNPHFI CNARVLVKPY REKSRSSRYL 401: DNYKPLHGMR YGSKFIERDI EMNTLPPRVS ESSRMRKPFL SEPEQSVSKS LPTNYSYLGF SSDDFKLTSN AEQEEQAERL SYLLDYLNTE DNVMNITTNY 501: RDNDRRTHCE SLDSQVLNLP ESPFSSLSGK EISTVT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)