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AT5G60540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : pyridoxine biosynthesis 2
Curator
Summary (TAIR10)
Encodes a protein predicted to function in tandem with PDX1 to form glutamine amidotransferase complex with involved in vitamin B6 biosynthesis. PDX2 is predicted to function as glutaminase within the complex.
Computational
Description (TAIR10)
pyridoxine biosynthesis 2 (PDX2); CONTAINS InterPro DOMAIN/s: PdxT/SNO family, conserved site (InterPro:IPR021196), SNO glutamine amidotransferase (InterPro:IPR002161); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G60540-MONOMERBioCyc:MetaCyc:AT5G60540-MONOMERBioGrid:21419EC:3.5.1.2
EC:4.3.3.6eggNOG:COG0311eggNOG:KOG3210EMBL:AB011483
EMBL:AK117313EMBL:AK220914EMBL:AY087902EMBL:BT005266
EMBL:CP002688EnsemblPlants:AT5G60540EnsemblPlants:AT5G60540.1entrez:836175
Gene3D:3.40.50.880GeneID:836175Genevisible:Q8LAD0GO:GO:0004359
GO:GO:0005829GO:GO:0006541GO:GO:0008614GO:GO:0036381
GO:GO:0042819GO:GO:0042823GO:GO:0046982GO:GO:1903600
Gramene:AT5G60540.1gramene_pathway:3.5.1.2gramene_pathway:CITRULBIO-PWYHAMAP:MF_01615
hmmpanther:PTHR31559hmmpanther:PTHR31559:SF0HOGENOM:HOG000039949InParanoid:Q8LAD0
IntAct:Q8LAD0InterPro:IPR002161InterPro:IPR021196InterPro:IPR029062
KEGG:00220+3.5.1.2KEGG:00250+3.5.1.2KEGG:00471+3.5.1.2KEGG:00750+4.3.3.6
KEGG:ath:AT5G60540KO:K08681MINT:MINT-8063085OMA:VYGTCAG
PaxDb:Q8LAD0Pfam:PF01174Pfam:Q8LAD0Pfscan:PS51130
PhylomeDB:Q8LAD0PIRSF:PIRSF005639PRIDE:Q8LAD0PRO:PR:Q8LAD0
PROSITE:PS01236PROSITE:PS51130ProteinModelPortal:Q8LAD0Proteomes:UP000006548
RefSeq:NP_568922.1scanprosite:PS01236SMR:Q8LAD0STRING:3702.AT5G60540.1
SUPFAM:SSF52317TAIR:AT5G60540tair10-symbols:ATPDX2tair10-symbols:EMB2407
tair10-symbols:PDX2TIGRfam:TIGR03800TIGRFAMs:TIGR03800UniGene:At.29154
UniPathway:UPA00245UniProt:Q8LAD0
Coordinates (TAIR10) chr5:-:24336874..24338647
Molecular Weight (calculated) 27439.90 Da
IEP (calculated) 4.96
GRAVY (calculated) -0.00
Length 255 amino acids
Sequence (TAIR10)
(BLAST)
001: MTVGVLALQG SFNEHIAALR RLGVQGVEIR KADQLLTVSS LIIPGGESTT MAKLAEYHNL FPALREFVKM GKPVWGTCAG LIFLADRAVG QKEGGQELVG
101: GLDCTVHRNF FGSQIQSFEA DILVPQLTSQ EGGPETYRGV FIRAPAVLDV GPDVEVLADY PVPSNKVLYS SSTVQIQEED ALPETKVIVA VKQGNLLATA
201: FHPELTADTR WHSYFIKMTK EIEQGASSSS SKTIVSVGET SAGPEPAKPD LPIFQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)