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AT5G01410.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:16236150 (2005): cytosol
  • PMID:16236150 (2005): nucleus nuclear envelope
  • PMID:16236150 (2005): plasma membrane
  • PMID:16236150 (2005): plastid plastid envelope plastid outer membrane
  • PMID:16157873 (2005): cytosol
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24124904 (2013): plastid
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Aldolase-type TIM barrel family protein
Curator
Summary (TAIR10)
Encodes a protein predicted to function in tandem with PDX2 to form glutamine amidotransferase complex with involved in vitamin B6 biosynthesis.
Computational
Description (TAIR10)
REDUCED SUGAR RESPONSE 4 (RSR4); FUNCTIONS IN: protein homodimerization activity, protein heterodimerization activity; INVOLVED IN: in 12 processes; LOCATED IN: cytosol, endomembrane system, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vitamin B6 biosynthesis protein (InterPro:IPR001852), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: pyridoxine biosynthesis 1.1 (TAIR:AT2G38230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-915-MONOMERBioGrid:17014DNASU:831738EC:4.3.3.6
eggNOG:COG0214eggNOG:KOG1606EMBL:AF428298EMBL:AF446352
EMBL:AK227197EMBL:AL161746EMBL:AY088650EMBL:AY097428
EMBL:AY972813EMBL:CP002688EnsemblPlants:AT5G01410EnsemblPlants:AT5G01410.1
entrez:831738ExpressionAtlas:Q8L940Gene3D:3.20.20.70GeneID:831738
Genevisible:Q8L940GO:GO:0005829GO:GO:0005886GO:GO:0006520
GO:GO:0006979GO:GO:0006982GO:GO:0009651GO:GO:0010224
GO:GO:0010335GO:GO:0012505GO:GO:0015994GO:GO:0036381
GO:GO:0042538GO:GO:0042803GO:GO:0042819GO:GO:0042823
GO:GO:0046982Gramene:AT5G01410.1HAMAP:MF_01824hmmpanther:PTHR31829
HOGENOM:HOG000227586InParanoid:Q8L940IntAct:Q8L940InterPro:IPR001852
InterPro:IPR011060InterPro:IPR013785KEGG:00750+4.3.3.6KEGG:ath:AT5G01410
KO:K06215OMA:THYSDPQPaxDb:Q8L940Pfam:PF01680
Pfam:Q8L940Pfscan:PS51129PhylomeDB:Q8L940PIR:T48163
PIRSF:PIRSF029271PRIDE:Q8L940PRO:PR:Q8L940PROSITE:PS01235
PROSITE:PS51129ProteinModelPortal:Q8L940Proteomes:UP000006548RefSeq:NP_195761.1
scanprosite:PS01235SMR:Q8L940STRING:3702.AT5G01410.1SUPFAM:SSF51366
TAIR:AT5G01410tair10-symbols:ATPDX1tair10-symbols:ATPDX1.3tair10-symbols:PDX1
tair10-symbols:PDX1.3tair10-symbols:RSR4TIGRfam:TIGR00343TIGRFAMs:TIGR00343
UniGene:At.23386UniPathway:UPA00245UniProt:F6M3L4UniProt:Q8L940
Coordinates (TAIR10) chr5:-:172576..173505
Molecular Weight (calculated) 33218.40 Da
IEP (calculated) 5.99
GRAVY (calculated) 0.04
Length 309 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGTGVVAVY GNGAITEAKK SPFSVKVGLA QMLRGGVIMD VVNAEQARIA EEAGACAVMA LERVPADIRA QGGVARMSDP QMIKEIKQAV TIPVMAKARI
101: GHFVEAQILE AIGIDYIDES EVLTLADEDH HINKHNFRIP FVCGCRNLGE ALRRIREGAA MIRTKGEAGT GNIIEAVRHV RSVNGDIRVL RNMDDDEVFT
201: FAKKLAAPYD LVMQTKQLGR LPVVQFAAGG VATPADAALM MQLGCDGVFV GSGIFKSGDP ARRARAIVQA VTHYSDPEML VEVSCGLGEA MVGINLNDEK
301: VERFANRSE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)