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AT1G10960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:18633119 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ferredoxin 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ferredoxin 1 (FD1); FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding; INVOLVED IN: response to karrikin; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), Ferredoxin (InterPro:IPR001041), Ferredoxin [2Fe-2S], plant (InterPro:IPR010241), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: 2Fe-2S ferredoxin-like superfamily protein (TAIR:AT1G60950.1); Has 7651 Blast hits to 7649 proteins in 1369 species: Archae - 135; Bacteria - 5662; Metazoa - 7; Fungi - 14; Plants - 626; Viruses - 5; Other Eukaryotes - 1202 (source: NCBI BLink).
Protein Annotations
BioGrid:22879eggNOG:COG0633eggNOG:ENOG410IYGQEMBL:AY058106
EMBL:AY086012EMBL:AY127948EMBL:CP002684EMBL:U95973
EnsemblPlants:AT1G10960EnsemblPlants:AT1G10960.1entrez:837639Gene3D:3.10.20.30
GeneID:837639Genevisible:O04090GO:GO:0009055GO:GO:0009507
GO:GO:0009570GO:GO:0022900GO:GO:0046872GO:GO:0051537
GO:GO:0080167Gramene:AT1G10960.1hmmpanther:PTHR19370hmmpanther:PTHR19370:SF120
HOGENOM:HOG000217152InParanoid:O04090IntAct:O04090InterPro:IPR001041
InterPro:IPR006058InterPro:IPR010241InterPro:IPR012675KEGG:ath:AT1G10960
KO:K02639OMA:CTIITHQPaxDb:O04090Pfam:O04090
Pfam:PF00111Pfscan:PS51085PhylomeDB:O04090PIR:E86243
PRIDE:O04090PRO:PR:O04090PROSITE:PS00197PROSITE:PS51085
ProteinModelPortal:O04090Proteomes:UP000006548RefSeq:NP_172565.1scanprosite:PS00197
SMR:O04090STRING:3702.AT1G10960.1SUPFAM:SSF54292TAIR:AT1G10960
tair10-symbols:ATFD1tair10-symbols:FD1TIGRfam:TIGR02008TIGRFAMs:TIGR02008
UniGene:At.21590UniGene:At.75115UniProt:O04090
Coordinates (TAIR10) chr1:+:3664445..3664891
Molecular Weight (calculated) 15897.60 Da
IEP (calculated) 4.17
GRAVY (calculated) -0.10
Length 148 amino acids
Sequence (TAIR10)
(BLAST)
001: MASTALSSAI VSTSFLRRQQ TPISLRSLPF ANTQSLFGLK SSTARGGRVT AMATYKVKFI TPEGEQEVEC EEDVYVLDAA EEAGLDLPYS CRAGSCSSCA
101: GKVVSGSIDQ SDQSFLDDEQ MSEGYVLTCV AYPTSDVVIE THKEEAIM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)