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AT3G16050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : pyridoxine biosynthesis 1.2
Curator
Summary (TAIR10)
Encodes a protein with pyridoxal phosphate synthase activity whose transcripts were detected mostly in roots and accumulate during senescence. The protein was found in very low abundance, which prevented a specific localisation.
Computational
Description (TAIR10)
pyridoxine biosynthesis 1.2 (PDX1.2); FUNCTIONS IN: protein heterodimerization activity; INVOLVED IN: pyridoxal phosphate biosynthetic process, metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Vitamin B6 biosynthesis protein (InterPro:IPR001852), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT5G01410.1); Has 3117 Blast hits to 3111 proteins in 1095 species: Archae - 240; Bacteria - 1784; Metazoa - 13; Fungi - 157; Plants - 173; Viruses - 0; Other Eukaryotes - 750 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-784-MONOMERBioGrid:6184DNASU:820850eggNOG:COG0214
eggNOG:KOG1606EMBL:AB012247EMBL:AF029980EMBL:AF029981
EMBL:AK228092EMBL:BT003136EMBL:CP002686EnsemblPlants:AT3G16050
EnsemblPlants:AT3G16050.1entrez:820850Gene3D:3.20.20.70GeneID:820850
Genevisible:Q9ZNR6GO:GO:0003824GO:GO:0005829GO:GO:0042819
GO:GO:0042823GO:GO:0046982Gramene:AT3G16050.1hmmpanther:PTHR31829
hmmpanther:PTHR31829:SF2HOGENOM:HOG000227586IntAct:Q9ZNR6InterPro:IPR001852
InterPro:IPR011060InterPro:IPR013785KEGG:00750+4.3.3.6KEGG:ath:AT3G16050
KO:K06215OMA:AQTKQMGPaxDb:Q9ZNR6Pfam:PF01680
Pfam:Q9ZNR6Pfscan:PS51129PhylomeDB:Q9ZNR6PIRSF:PIRSF029271
PRIDE:Q9ZNR6PRO:PR:Q9ZNR6PROSITE:PS01235PROSITE:PS51129
ProteinModelPortal:Q9ZNR6Proteomes:UP000006548RefSeq:NP_188226.1scanprosite:PS01235
SMR:Q9ZNR6STRING:3702.AT3G16050.1SUPFAM:SSF51366TAIR:AT3G16050
tair10-symbols:A37tair10-symbols:ATPDX1.2tair10-symbols:PDX1.2UniGene:At.66514
UniGene:At.7601unipathway:UPA00245UniProt:Q9ZNR6
Coordinates (TAIR10) chr3:-:5444121..5445065
Molecular Weight (calculated) 33837.50 Da
IEP (calculated) 5.42
GRAVY (calculated) -0.07
Length 314 amino acids
Sequence (TAIR10)
(BLAST)
001: MADQAMTDQD QGAVTLYSGT AITDAKKNHP FSVKVGLAQV LRGGAIVEVS SVNQAKLAES AGACSVIVSD PVRSRGGVRR MPDPVLIKEV KRAVSVPVMA
101: RARVGHFVEA QILESLAVDY IDESEIISVA DDDHFINKHN FRSPFICGCR DTGEALRRIR EGAAMIRIQG DLTATGNIAE TVKNVRSLMG EVRVLNNMDD
201: DEVFTFAKKI SAPYDLVAQT KQMGRVPVVQ FASGGITTPA DAALMMQLGC DGVFVGSEVF DGPDPFKKLR SIVQAVQHYN DPHVLAEMSS GLENAMESLN
301: VRGDRIQDFG QGSV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)