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AT4G27130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Translation initiation factor SUI1 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Translation initiation factor SUI1 family protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation, translation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor SUI1 (InterPro:IPR001950), Eukaryotic translation initiation factor SUI1 (InterPro:IPR005874); BEST Arabidopsis thaliana protein match is: Translation initiation factor SUI1 family protein (TAIR:AT5G54760.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:14108eggNOG:COG0023eggNOG:KOG1770EMBL:AL035680
EMBL:AL161566EMBL:AY037234EMBL:AY060537EMBL:AY088288
EMBL:CP002687EMBL:U81042EnsemblPlants:AT4G27130EnsemblPlants:AT4G27130.1
entrez:828821Gene3D:3.30.780.10GeneID:828821Genevisible:P41568
GO:GO:0003743GO:GO:0006417Gramene:AT4G27130.1hmmpanther:PTHR10388
hmmpanther:PTHR10388:SF18HOGENOM:HOG000279813InParanoid:P41568IntAct:P41568
InterPro:IPR001950InterPro:IPR005874KEGG:ath:AT4G27130KO:K03113
OMA:NCNGCIVPaxDb:P41568Pfam:P41568Pfam:PF01253
Pfscan:PS50296PhylomeDB:P41568PIR:T06043PIRSF:PIRSF004499
PRIDE:P41568PRO:PR:P41568PROSITE:PS50296ProteinModelPortal:P41568
Proteomes:UP000006548RefSeq:NP_194443.1SMR:P41568STRING:3702.AT4G27130.1
SUPFAM:SSF55159TAIR:AT4G27130TIGRfam:TIGR01160TIGRFAMs:TIGR01160
UniGene:At.2857UniProt:P41568
Coordinates (TAIR10) chr4:-:13604814..13605525
Molecular Weight (calculated) 12593.00 Da
IEP (calculated) 8.71
GRAVY (calculated) -0.56
Length 113 amino acids
Sequence (TAIR10)
(BLAST)
001: MSELDSQVPT AFDPFADANA EDSGAGTKEY VHIRVQQRNG RKSLTTVQGL KKEYSYTKIL KDLKKEFCCN GTVVQDSELG QVIQLQGDQR KNVSTFLVQA
101: GLVKKDNIKI HGF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)