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AT1G30230.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24124904 (2013): plastid
  • PMID:24012629 (2013): nucleus
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation, response to cadmium ion; LOCATED IN: plasma membrane, eukaryotic translation elongation factor 1 complex; EXPRESSED IN: guard cell, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Translation elongation factor EF1B/ribosomal protein S6 (InterPro:IPR014717), Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange (InterPro:IPR014038), Translation elongation factor EF1B, beta/delta chains, conserved site (InterPro:IPR001326); BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1B/ribosomal protein S6 family protein (TAIR:AT2G18110.1); Has 1011 Blast hits to 1009 proteins in 269 species: Archae - 0; Bacteria - 0; Metazoa - 524; Fungi - 164; Plants - 164; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).
Protein Annotations
BioGrid:25138eggNOG:COG2092eggNOG:KOG1668EMBL:AC073506
EMBL:AK226216EMBL:CP002684EMBL:X74733EnsemblPlants:AT1G30230
EnsemblPlants:AT1G30230.1entrez:839903ExpressionAtlas:P48006Gene3D:3.30.70.60
GeneID:839903Genevisible:P48006GO:GO:0003746GO:GO:0005853
hmmpanther:PTHR11595hmmpanther:PTHR11595:SF27HOGENOM:HOG000207273InParanoid:P48006
InterPro:IPR001326InterPro:IPR010987InterPro:IPR014038InterPro:IPR014717
iPTMnet:P48006ncoils:CoilPaxDb:P48006Pfam:P48006
Pfam:PF00736PhylomeDB:P48006PIR:S37103PRIDE:P48006
PRO:PR:P48006PROSITE:PS00824PROSITE:PS00825ProteinModelPortal:P48006
Proteomes:UP000006548Reactome:R-ATH-156842RefSeq:NP_174314.2scanprosite:PS00824
scanprosite:PS00825SMART:SM00888SMR:P48006STRING:3702.AT1G30230.2
SUPFAM:SSF47616SUPFAM:SSF54984TAIR:AT1G30230UniGene:At.24745
UniProt:B3LF87UniProt:P48006
Coordinates (TAIR10) chr1:+:10639286..10640515
Molecular Weight (calculated) 25133.50 Da
IEP (calculated) 4.17
GRAVY (calculated) -0.28
Length 231 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAFPNLNSD AGLKKLDEHL LTRSYITGYQ ASKDDITVFA ALAKPPTSQY VNASRWYNHI DALLRISGVS AEGSGVIVEG SAPITEEAVA TPPAADSKDA
101: AADEEDDDDV DLFGEETEEE KKAAEERAAS VKASTKKKES GKSSVLIDIK PWDDETDMKK LEEAVKSIQM EGLFWGASKL VPVGYGIKKL QILCTIVDDL
201: VSIDTMIEEQ LTVEPINEYV QSCDIVAFNK I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)