AT1G29200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 0.434 golgi 0.316 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : O-fucosyltransferase family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
O-fucosyltransferase family protein; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT1G62330.1); Has 819 Blast hits to 814 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 819; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:10208425..10210488 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55980.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.59 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||||||
| Length | 495 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSIKNGAVDA SPVQMYSRLL NLASDSLAKN EFKPDTPNFR EERSSKSSQW KPCADNNKAA VALERSRELS NGYIMVSANG GLNQQRVAIC NAVAVAALLN 101: ATLVLPRFLY SNVWKDPSQF GDIYQEDHFI EYLKDEVNIV KNLPQHLKST DNKNLSLVTD TELVKEATPV DYIEHVLPLL KKYGMVHLFG YGNRLGFDPL 201: PFDVQRLRCK CNFHALKFAP KIQEAGSLLV KRIRRFKTSR SRLEEALLGE SMVKSTVKGE EEPLKYLALH LRFEEDMVAY SLCDFGGGEA ERKELQAYRE 301: DHFPLLLKRL KKSKPVSPEE LRKTGKCPLT PEEATLVLAG LGFKRKTYIY LAGSQIYGGS SRMLPLTRLY PNIATKETLL TPQELAPFKN FSSQLAALDF 401: IACIASDVFA MTDSGSQLSS LVSGFRNYYG NGQAPTLRPN KKRLAAILSD SETIKWKIFE DRVRKMVEEG QKLRTRPYGR SIYRQPRCPE CMCKF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)