AT5G24060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G49140.1); Has 316 Blast hits to 299 proteins in 80 species: Archae - 0; Bacteria - 20; Metazoa - 63; Fungi - 28; Plants - 83; Viruses - 10; Other Eukaryotes - 112 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:8130273..8133269 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 53726.60 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.31 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.59 | ||||||||||||||||||||||||
| Length | 481 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVPGFFSSM ALLRHCPVSN TEDGGGSFFH VAPRRTFRPH LLNTSSGKYL RRNRTQAIAE YLGSASDPKK PTGKSSYHPS EDIRAYVPEK NPGDSRLSPP 101: ETARTIIEVN KKGTLMLSGL LGIGVHENIL WPDIPYVTDQ HGNIYFQVKE NEDIMQTVVT SDNNYVQVIV GFDTMEMIKD MELSSPSGIG FGIEEIEDGE 201: SEVEDENKGD EDEGEDKDDE EWVAVLEDGD DEDNYVSDSD ESLGDWANLE TMRYCHPMYF ARRMAEVAST DPVNWMDQPS AGLAIQGLLS PVIVEDHSDI 301: QKHISGCIST GTDKNKEREN SEEIFEGIGE NESEILHVEN SRNAIQYYKL EIIRIQLITA QGHQTEVEVE DVRKAQPDVI ACASDGILTR LEEDGDKLTE 401: ALRSLCWRNN GIQAEEVKLI GIDSLGFDLR ICSGMQIETL RFAFSIRATS EHNAEGQLRE LLFASTPSKP QKPKQTNQKE S |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)