AT1G21600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : plastid transcriptionally active 6 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
plastid transcriptionally active 6 (PTAC6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: positive regulation of transcription, DNA-dependent, transcription from plastid promoter; LOCATED IN: plastid chromosome, chloroplast, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:7571514..7573782 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37378.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.60 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||||||||||||||||||||||||||||||
| Length | 328 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASSAASPSL SLLSFTSKPP YPSGSQRLFA SFRTDGLFAP LTLKSRRGRG IVVKVDDVDA DGGGADEYDM DDEEVEEVDN KKDYDVEYDP LAAAIAAAGG 101: GGDGDIAFVQ SKSFISTQGW DSDMVVDYRI NEDEFHKLSL MDCDFFIRKP PDPDNDVYDF REMYVTPPDT DIYSIPRVLA PMPQKYIRCA MSDYGCYNVT 201: EPPIDAPRDP LYKSEREISK VFLTKHYRNR RTNDPEFVLD LEEIYVIDSK TKSITRARVL VTVPGGRKRD RKDDLLVIRD NGTSFKIIHV GERDDPTTVI 301: EREEWTKTRE DMEKHLRKLR DFSVSNWF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)