AT1G04620.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family; FUNCTIONS IN: coenzyme F420 hydrogenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal (InterPro:IPR007525), Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal (InterPro:IPR007516); Has 499 Blast hits to 498 proteins in 165 species: Archae - 202; Bacteria - 188; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:1282869..1286492 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 51664.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.24 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 462 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MITVVTSRLS LLPPVFSVVN SSSSRSKDMN LEPKKKVKLR EDWREKSRPI PPGGTYPAKD HCSQCGLCDT YYIAHVKEAC AFLGDGMSRI ESLEPVVHGR 101: GRKADSLQDT YFGVHQEQLY ARKLKPVEGA QWTGIVTTIA IEMLKSNMVE AVVCVQSDPE DRLSPRPVLA RTPEEVLAAR GVKPTLSPNL NTLELIEASG 201: VKRLLFCGVG CQVQALRSVE QHLNLEKLYV LGTNCVDNGT RDGLDKFLKA ASKEPETVLH YEFMQDYKVQ LKHLDGHIEE VPYFSLPAND LVDVIAPSCY 301: SCFDYTNALA DLVIGYMGVP KYSGLNMTDH PQYITVRNER GKEMLSLVEN LLEITPTISS GDRRPFVTET VKADDAAKFG QGPAQPAPLF VGNIIAFILN 401: LVGPKGLEFA RYSLDYHTIR NYLYVNRKWG KQRANTHMPS YAKKIVEMYN KNGQIDKMLS KK |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)