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AT5G49420.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : MADS-box transcription factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MADS-box transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: antipodal cell, pollen tube; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: MADS-box transcription factor family protein (TAIR:AT5G38620.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:AY141239EMBL:CP002688
EMBL:DQ447056EnsemblPlants:AT5G49420EnsemblPlants:AT5G49420.1entrez:835002
GeneID:835002GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351Gramene:AT5G49420.1hmmpanther:PTHR11945hmmpanther:PTHR11945:SF233
IntAct:Q7X9H5InterPro:IPR002100KEGG:ath:AT5G49420ncoils:Coil
Pfam:PF00319Pfscan:PS50066PhylomeDB:Q7X9H5PROSITE:PS50066
Proteomes:UP000006548RefSeq:NP_199753.3SMART:SM00432SMR:Q7X9H5
STRING:3702.AT5G49420.1SUPFAM:SSF55455TAIR:AT5G49420UniGene:At.64280
UniProt:Q7X9H5
Coordinates (TAIR10) chr5:-:20035166..20036170
Molecular Weight (calculated) 37398.40 Da
IEP (calculated) 4.19
GRAVY (calculated) -0.45
Length 334 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKKGGTKRK IAIETIQKRD SLRVTCTKRR EGLYSKASQL CLLSDAQIAI LATPPSSESN VSFYSFGHSS VDAVVSAFLS GQRPVPKDNK ETREDVGICL
101: TRNNLGLGFW WNDESLARSE NPQEISEAID SMRTLLRNLK ELRADEALAC NQAFVNDRED LKNNDKCDFV SDHETHDQTL ILQSASPICC IPENLNEITQ
201: EPNQTLNIQS STSAICCVPD NSPENFNEIT EEQDQIRSIC ETFCVMDNNA ALPEMNLDYD QDIGFDTPFE SALNDWFSDN TTHQEISASI LNAVVDDQVS
301: VDLTPFSYFQ RCLDGDNLRF SDCFKDFANT ISAL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)