AT2G28920.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 1.000 ASURE: plasma membrane What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : RING/U-box superfamily protein | ||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G41400.1); Has 7703 Blast hits to 7686 proteins in 274 species: Archae - 0; Bacteria - 0; Metazoa - 1826; Fungi - 508; Plants - 4325; Viruses - 47; Other Eukaryotes - 997 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:+:12418017..12418454 | ||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 15869.40 Da | ||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.45 | ||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.46 | ||||||||||||||||||||||||||||||||||||
Length | 145 amino acids | ||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MASSCCGDYV AAASPEMSTV MGSESIVLRL LCVVFIILFY GSIILLCFVM YPKLPKEEIG DEEAGEPLPP AVRLTKCGGG DGGDGDGVKA DVCVICLEDF 101: KVNDVVRVLV RCKHVFHVDC IDSWCFYKLT CPICRAPFQW FGGDW |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)