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AT2G28920.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G41400.1); Has 7703 Blast hits to 7686 proteins in 274 species: Archae - 0; Bacteria - 0; Metazoa - 1826; Fungi - 508; Plants - 4325; Viruses - 47; Other Eukaryotes - 997 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AC005727EMBL:BT030073
EMBL:CP002685EnsemblPlants:AT2G28920EnsemblPlants:AT2G28920.1entrez:817441
Gene3D:3.30.40.10GeneID:817441GO:GO:0008270GO:GO:0016021
Gramene:AT2G28920.1hmmpanther:PTHR22765hmmpanther:PTHR22765:SF5HOGENOM:HOG000154045
InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT2G28920OMA:CIDSWCF
Pfam:PF13639Pfscan:PS50089PhylomeDB:Q9ZV22PIR:E84690
PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_180458.1SMART:SM00184
SMR:Q9ZV22SUPFAM:SSF57850TAIR:AT2G28920TMHMM:TMhelix
UniGene:At.52958UniProt:Q9ZV22
Coordinates (TAIR10) chr2:+:12418017..12418454
Molecular Weight (calculated) 15869.40 Da
IEP (calculated) 4.45
GRAVY (calculated) 0.46
Length 145 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSCCGDYV AAASPEMSTV MGSESIVLRL LCVVFIILFY GSIILLCFVM YPKLPKEEIG DEEAGEPLPP AVRLTKCGGG DGGDGDGVKA DVCVICLEDF
101: KVNDVVRVLV RCKHVFHVDC IDSWCFYKLT CPICRAPFQW FGGDW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)