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AT3G27940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : LOB domain-containing protein 26
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LOB domain-containing protein 26 (LBD26); INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 10 (TAIR:AT2G23660.2); Has 711 Blast hits to 709 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 711; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:822418EMBL:AB473861EMBL:AK118484EMBL:AP001302
EMBL:BT003673EMBL:CP002686EnsemblPlants:AT3G27940EnsemblPlants:AT3G27940.1
entrez:822418GeneID:822418Gramene:AT3G27940.1hmmpanther:PTHR31301
HOGENOM:HOG000081832InterPro:IPR004883KEGG:ath:AT3G27940OMA:QNKQCVN
PaxDb:Q9LIJ0Pfam:PF03195Pfam:Q9LIJ0Pfscan:PS50891
PhylomeDB:Q9LIJ0PRIDE:Q9LIJ0PRO:PR:Q9LIJ0PROSITE:PS50891
Proteomes:UP000006548RefSeq:NP_189433.1TAIR:AT3G27940tair10-symbols:LBD26
UniGene:At.42877UniProt:Q9LIJ0
Coordinates (TAIR10) chr3:+:10375897..10376358
Molecular Weight (calculated) 17601.40 Da
IEP (calculated) 9.72
GRAVY (calculated) -0.49
Length 153 amino acids
Sequence (TAIR10)
(BLAST)
001: MNANPCEVCR FQNKQCVNNC MFALLFPSSD LEKFDVVNRI FGLETLTFYL KDLSPMERID TTRTLYYEAK PCFLNPPKNP SKFLEALLNY PYQKAEEVSK
101: TKKLLASYSR PCVVLALPAP KYTQSKSKPS VLRKRKRKTK SSDESAIRVV EDS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)