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AT5G27090.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : AGAMOUS-like 54
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AGAMOUS-like 54 (AGL54); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: antipodal cell; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 53 (TAIR:AT5G27070.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:AF160760EMBL:AY141218
EMBL:CP002688EnsemblPlants:AT5G27090EnsemblPlants:AT5G27090.1entrez:832767
GeneID:832767GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351Gramene:AT5G27090.1hmmpanther:PTHR11945hmmpanther:PTHR11945:SF240
HOGENOM:HOG000033847IntAct:Q9S9U2InterPro:IPR002100OMA:WMENDEA
Pfam:PF00319Pfscan:PS50066PhylomeDB:Q9S9U2PROSITE:PS50066
Proteomes:UP000006548RefSeq:NP_198061.2SMART:SM00432SMR:Q9S9U2
STRING:3702.AT5G27090.1SUPFAM:SSF55455TAIR:AT5G27090tair10-symbols:AGL54
UniGene:At.30827UniProt:Q9S9U2
Coordinates (TAIR10) chr5:+:9531845..9532408
Molecular Weight (calculated) 21739.00 Da
IEP (calculated) 9.22
GRAVY (calculated) -0.80
Length 187 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSSTSTKKN TKLFVRNQTC FKKSSLSSSN AKKTTNLSMR EQTMFKKALE LSTLCDIEVC VIYYGRDGKL IKTWPEDQSK VRDMAERFSR LHERERCKKR
101: TNLSLFLRKQ ILHDKKLSEK VLEMEDSLES GLRVLQDKLL LLQPEKNQTE LGQSCAVYST TYPLSSPSLI EDHQHQQQWT EPLSNTE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)