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AT5G25390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.
Computational
Description (TAIR10)
shine2 (SHN2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G11190.1); Has 5652 Blast hits to 5519 proteins in 248 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5647; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT5G25390EnsemblPlants:AT5G25390.1entrez:832611hmmpanther:PTHR31194
hmmpanther:PTHR31194:SF13Pfam:PF00847Pfscan:PS51032tair10-symbols:SHN2
Coordinates (TAIR10) chr5:+:8820637..8821741
Molecular Weight (calculated) 20814.80 Da
IEP (calculated) 9.60
GRAVY (calculated) -0.57
Length 186 amino acids
Sequence (TAIR10)
(BLAST)
001: MVHSKKFRGV RQRQWGSWVS EIRHPLLVWL GTFDTAETAA RAYDQAAVLM NGQSAKTNFP VIKSNGSNSL EINSALRSPK SLSELLNAKL RKNCKDQTPY
101: LTCLRLDNDS SHIGVWQKRA GSKTSPNWVK LVELGDKVNA RPGGDIETNK MKVRNEDVQE DDQMAMQMIE ELLNWTCPGS GSIAQV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)