AT5G40220.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : AGAMOUS-like 43 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
AGAMOUS-like 43 (AGL43); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 75 (TAIR:AT5G41200.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:16078390..16079364 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37009.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.54 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||||||||||||||
| Length | 324 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTMRSSLPSS SSAYSLASTS LSNRLETIFK KASELCTLCD IEACVIYYGP DGELKTWPPE REKVRDIALR YSQLNEALRR KKSVNLHGFL NKKKKNKGLK 101: NTDKKRKTSL KKVNVLKYPL ADHYPPDQVS PLIQSLELHV SKFHERLEFL ESRKQNETQP DHHSLASSSL NHQTQSLNPS QFSLFMYNHG DNTLSQIPVS 201: ASNFNQDYFS ALLEQSELKN QLMKQEICGN DQNQNMWMGN ITNNNFQLPC VSVQESVNNF GLMHKEFYGC DHNMSVGNIN SNSCEHPCVS STQHYSAVEE 301: SVNNPWLNQL MQNELYGYGY ADFC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)