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AT5G38620.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : MADS-box transcription factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MADS-box transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: MADS-box transcription factor family protein (TAIR:AT5G49420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:AB005231EMBL:AY141237
EMBL:CP002688EnsemblPlants:AT5G38620EnsemblPlants:AT5G38620.1entrez:833852
GeneID:833852GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351Gramene:AT5G38620.1hmmpanther:PTHR11945hmmpanther:PTHR11945:SF233
HOGENOM:HOG000033848IntAct:Q9FFV9InterPro:IPR002100KEGG:ath:AT5G38620
OMA:NDFANTIPfam:PF00319Pfscan:PS50066PhylomeDB:Q9FFV9
PROSITE:PS50066Proteomes:UP000006548RefSeq:NP_198678.1SMART:SM00432
SMR:Q9FFV9STRING:3702.AT5G38620.1SUPFAM:SSF55455TAIR:AT5G38620
UniGene:At.64261UniProt:Q9FFV9
Coordinates (TAIR10) chr5:-:15463858..15464907
Molecular Weight (calculated) 38850.90 Da
IEP (calculated) 4.16
GRAVY (calculated) -0.43
Length 349 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKGTKRKIA IETIQKRDSL RVTCTKRRKG LYSKASQLCL LSDAQIAILA TPPSSESDVS FYSFGHSSVD AVVSAFLSGK RPVSAPKDNK ETREDVGICL
101: TRKNLGLGFW WNDESLVRSE NPQEISEAIG SMWTLLSNLK ELRADEACVN DHKDLKKNEK SDVHGTQDQT LIFQSASAVC CIPENLNDIT QEPNQTLDIQ
201: SSSSAICCVP DKSPEIFNEI TEEQDQILSI CETFCVTDNN NNNNNNAALP EVNLYYNQDM AIDQLIDFNT PFESSIDDWF SDNTTHQETT SASILNDVGV
301: DDQVSVDTNP FSYFQSLEDA DLVFQRCLDG DNLRFSDCFN DFANTIAAV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)