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AT1G79750.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31911558 (2020): mitochondrion
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24124904 (2013): plastid
  • PMID:23750852 (2013): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21841088 (2011): mitochondrion
  • PMID:21311031 (2011): mitochondrion
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NADP-malic enzyme 4
Curator
Summary (TAIR10)
The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME4 is localized to chloroplasts. The gene is expressed throughout the whole plant and during embryogenesis and germination. A possible involvement in the fatty acid biosynthesis has been proposed.
Computational
Description (TAIR10)
NADP-malic enzyme 4 (NADP-ME4); CONTAINS InterPro DOMAIN/s: Malic enzyme, NAD-binding (InterPro:IPR012302), Malic oxidoreductase (InterPro:IPR001891), Malic enzyme, conserved site (InterPro:IPR015884), Malic enzyme, N-terminal (InterPro:IPR012301), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NADP-malic enzyme 3 (TAIR:AT5G25880.1); Has 9573 Blast hits to 9553 proteins in 2441 species: Archae - 143; Bacteria - 6332; Metazoa - 610; Fungi - 220; Plants - 473; Viruses - 0; Other Eukaryotes - 1795 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G79750-MONOMERBioGrid:29532EC:1.1.1.40eggNOG:COG0281
eggNOG:KOG1257EMBL:AC010793EMBL:AC011717EMBL:AK222053
EMBL:AY060584EMBL:AY142064EMBL:CP002684EnsemblPlants:AT1G79750
EnsemblPlants:AT1G79750.1entrez:844314Gene3D:3.40.50.10380Gene3D:3.40.50.720
GeneID:844314Genevisible:Q9CA83GO:GO:0004471GO:GO:0004473
GO:GO:0006108GO:GO:0006633GO:GO:0008270GO:GO:0008948
GO:GO:0009507GO:GO:0042803GO:GO:0050897GO:GO:0051287
GO:GO:0051289Gramene:AT1G79750.1hmmpanther:PTHR23406hmmpanther:PTHR23406:SF11
HOGENOM:HOG000042486InParanoid:Q9CA83IntAct:Q9CA83InterPro:IPR001891
InterPro:IPR012301InterPro:IPR012302InterPro:IPR015884InterPro:IPR016040
KEGG:ath:AT1G79750KO:K00029OMA:MASFHEHPaxDb:Q9CA83
Pfam:PF00390Pfam:PF03949Pfam:Q9CA83PhylomeDB:Q9CA83
PIR:E96828PIRSF:PIRSF000106PRIDE:Q9CA83PRINTS:PR00072
PRO:PR:Q9CA83PROSITE:PS00331ProteinModelPortal:Q9CA83Proteomes:UP000006548
RefSeq:NP_178093.1SABIO-RK:Q9CA83scanprosite:PS00331SMART:SM00919
SMART:SM01274SMR:Q9CA83STRING:3702.AT1G79750.1SUPFAM:SSF51735
SUPFAM:SSF53223TAIR:AT1G79750tair10-symbols:ATNADP-ME4tair10-symbols:NADP-ME4
UniGene:At.21634UniPathway:UPA00321UniProt:Q9CA83
Coordinates (TAIR10) chr1:-:30007655..30011179
Molecular Weight (calculated) 71164.70 Da
IEP (calculated) 6.56
GRAVY (calculated) -0.12
Length 646 amino acids
Sequence (TAIR10)
(BLAST)
001: MISLTPSLFL NKTVVPGCST RLSLRQPRTI ITPPASLRVF SSLGSNQDPT GSVLIETTAT SSSSLETSAA DIVPKSTVSG GVQDVYGEDA ATEDMPITPW
101: SLSVASGYTL LRDPHHNKGL AFSHRERDAH YLRGLLPPTV ISQDLQVKKI MHTLRQYQVP LQKYMAMMDL QETNERLFYK LLIDHVEELL PVIYTPTVGE
201: ACQKYGSIFL RPQGLFISLK EKGKIHEVLR NWPEKNIQVI VVTDGERILG LGDLGCQGMG IPVGKLSLYT ALGGVRPSAC LPVTIDVGTN NEKLLNDEFY
301: IGLRQRRATG EEYSELMHEF MTAVKQNYGE KVVIQFEDFA NHNAFDLLAK YGTTHLVFND DIQGTASVVL AGLIAALRFV GGSLSDHRFL FLGAGEAGTG
401: IAELIALEIS KKSHIPLEEA RKNIWLVDSK GLIVSSRKES IQHFKKPWAH DHEPIRELVD AVKAIKPTVL IGTSGVGQTF TQDVVETMAK LNEKPIILSL
501: SNPTSQSECT AEEAYTWSQG RAIFASGSPF APVEYEGKTF VPGQANNAYI FPGFGLGLIM SGTIRVHDDM LLAASEALAE ELMEEHYEKG MIYPPFRNIR
601: KISARIAAKV AAKAYELGLA TRLPQPKELE QCAESSMYSP SYRSYR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)