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AT3G14100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: mRNA 3'-UTR binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: oligouridylate-binding protein 1A (TAIR:AT1G54080.1); Has 33134 Blast hits to 32894 proteins in 1695 species: Archae - 47; Bacteria - 3311; Metazoa - 12038; Fungi - 6892; Plants - 9686; Viruses - 3; Other Eukaryotes - 1157 (source: NCBI BLink).
Protein Annotations
BioGrid:5960eggNOG:ENOG410IQXJeggNOG:ENOG410XQ8UEMBL:AP000600
EMBL:AY087692EMBL:AY139775EMBL:BT004540EMBL:CP002686
EnsemblPlants:AT3G14100EnsemblPlants:AT3G14100.1entrez:820626Gene3D:3.30.70.330
GeneID:820626Genevisible:Q9LJH8GO:GO:0000166GO:GO:0003723
GO:GO:0005634GO:GO:0006397Gramene:AT3G14100.1hmmpanther:PTHR24012
hmmpanther:PTHR24012:SF379HOGENOM:HOG000206748InParanoid:Q9LJH8IntAct:Q9LJH8
InterPro:IPR000504InterPro:IPR012677iPTMnet:Q9LJH8KEGG:ath:AT3G14100
KO:K13201OMA:ETTNTKQPaxDb:Q9LJH8Pfam:PF00076
Pfam:Q9LJH8Pfscan:PS50102PhylomeDB:Q9LJH8PRIDE:Q9LJH8
PRO:PR:Q9LJH8PROSITE:PS50102ProteinModelPortal:Q9LJH8Proteomes:UP000006548
RefSeq:NP_188026.1SMART:SM00360SMR:Q9LJH8STRING:3702.AT3G14100.1
SUPFAM:SSF54928TAIR:AT3G14100UniGene:At.22594UniGene:At.70203
UniProt:Q9LJH8
Coordinates (TAIR10) chr3:+:4673027..4675950
Molecular Weight (calculated) 47091.30 Da
IEP (calculated) 7.72
GRAVY (calculated) -0.52
Length 427 amino acids
Sequence (TAIR10)
(BLAST)
001: MQNPRLKQHQ QQQQQQAMMQ QQALMQQHSL YHPGVLAPPQ LEPVPSGNLP PGFDPSTCRS VYVGNIHTQV TEPLLQEIFT STGPVESSKL IRKDKSSYGF
101: VHYFDRRSAA LAILSLNGRH LFGQPIKVNW AYATGQREDT SSHFNIFVGD LSPEVTDATL YQSFSVFSSC SDARVMWDQK TGRSRGFGFV SFRNQQDAQT
201: AINEMNGKWL SSRQIRCNWA TKGATSGDDK LSSDGKSVVE LTTGSSEDGK ETLNEETPEN NSQFTTVYVG NLAPEVTQLD LHRYFHALGA GVIEEVRVQR
301: DKGFGFVRYN THPEAALAIQ MGNTQPYLFN RQIKCSWGNK PTPPGTASNP LPPPAPAPVP GLSAADLLNY ERQLALSKMA SVNALMHQQG QHPLRQAHGI
401: NAAGATAAMY DGGFQNVAAA QQLMYYQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)