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AT4G27000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATRBP45C; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein 45A (TAIR:AT5G54900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:14095eggNOG:COG0724eggNOG:KOG0118EMBL:AF370339
EMBL:AL035440EMBL:AL161566EMBL:AY054487EMBL:AY062999
EMBL:AY093292EMBL:CP002687EnsemblPlants:AT4G27000EnsemblPlants:AT4G27000.1
entrez:828808Gene3D:3.30.70.330GeneID:828808Genevisible:Q93W34
GO:GO:0000166GO:GO:0005634GO:GO:0005829GO:GO:0006397
GO:GO:0008143Gramene:AT4G27000.1hmmpanther:PTHR24012hmmpanther:PTHR24012:SF333
HOGENOM:HOG000186228InParanoid:Q93W34IntAct:Q93W34InterPro:IPR000504
InterPro:IPR012677KEGG:ath:AT4G27000OMA:RNLQTYNPaxDb:Q93W34
Pfam:PF00076Pfam:Q93W34Pfscan:PS50102PIR:T04823
PRIDE:Q93W34PRO:PR:Q93W34PROSITE:PS50102ProteinModelPortal:Q93W34
Proteomes:UP000006548RefSeq:NP_567764.1SMART:SM00360SMR:Q93W34
STRING:3702.AT4G27000.1SUPFAM:SSF54928TAIR:AT4G27000tair10-symbols:ATRBP45C
UniGene:At.47594UniGene:At.67098UniGene:At.67775UniProt:Q93W34
Coordinates (TAIR10) chr4:-:13554983..13557763
Molecular Weight (calculated) 44974.80 Da
IEP (calculated) 5.70
GRAVY (calculated) -0.84
Length 415 amino acids
Sequence (TAIR10)
(BLAST)
001: MMQQPPPASN GAATGPGQIP SDQQAYLQQQ QSWMMQHQQQ QQGQPPAGWN QQSAPSSGQP QQQQYGGGGS QNPGSAGEIR SLWIGDLQPW MDENYLMNVF
101: GLTGEATAAK VIRNKQNGYS EGYGFIEFVN HATAERNLQT YNGAPMPSSE QAFRLNWAQL GAGERRQAEG PEHTVFVGDL APDVTDHMLT ETFKAVYSSV
201: KGAKVVNDRT TGRSKGYGFV RFADESEQIR AMTEMNGQYC SSRPMRTGPA ANKKPLTMQP ASYQNTQGNS GESDPTNTTI FVGAVDQSVT EDDLKSVFGQ
301: FGELVHVKIP AGKRCGFVQY ANRACAEQAL SVLNGTQLGG QSIRLSWGRS PSNKQTQPDQ AQYGGGGGYY GYPPQGYEAY GYAPPPQDPN AYYGGYAGGG
401: YGNYQQPGGY QQQQQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)