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AT1G17370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : oligouridylate binding protein 1B
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
oligouridylate binding protein 1B (UBP1B); FUNCTIONS IN: mRNA 3'-UTR binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G14100.1); Has 681 Blast hits to 681 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 681; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IQXJeggNOG:ENOG410XQ8UEMBL:AC007843EMBL:AC022492
EMBL:AY085705EMBL:BT026477EMBL:CP002684EnsemblPlants:AT1G17370
EnsemblPlants:AT1G17370.1entrez:838309ExpressionAtlas:Q9LQI9Gene3D:3.30.70.330
GeneID:838309Genevisible:Q9LQI9GO:GO:0000166GO:GO:0003723
GO:GO:0005634GO:GO:0006397hmmpanther:PTHR24012hmmpanther:PTHR24012:SF379
HOGENOM:HOG000206748InParanoid:Q9LQI9IntAct:Q9LQI9InterPro:IPR000504
InterPro:IPR012677iPTMnet:Q9LQI9ncoils:CoilOMA:FSAYSTC
PaxDb:Q9LQI9Pfam:PF00076Pfam:Q9LQI9Pfscan:PS50102
PhylomeDB:Q9LQI9PIR:C86310PRIDE:Q9LQI9PRO:PR:Q9LQI9
PROSITE:PS50102ProteinModelPortal:Q9LQI9Proteomes:UP000006548RefSeq:NP_564018.1
SMART:SM00360SMR:Q9LQI9STRING:3702.AT1G17370.1SUPFAM:SSF54928
TAIR:AT1G17370tair10-symbols:UBP1BUniGene:At.43816UniProt:Q9LQI9
Coordinates (TAIR10) chr1:-:5951842..5954825
Molecular Weight (calculated) 46051.40 Da
IEP (calculated) 7.64
GRAVY (calculated) -0.48
Length 419 amino acids
Sequence (TAIR10)
(BLAST)
001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)