AT3G24530.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : AAA-type ATPase family protein / ankyrin repeat family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
AAA-type ATPase family protein / ankyrin repeat family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Ankyrin repeat-containing domain (InterPro:IPR020683), CbxX/CfqX (InterPro:IPR000641), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 1 in Arabidopsis thaliana (TAIR:AT2G28840.1); Has 62125 Blast hits to 27268 proteins in 1602 species: Archae - 369; Bacteria - 7189; Metazoa - 29752; Fungi - 5124; Plants - 2920; Viruses - 566; Other Eukaryotes - 16205 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:8945678..8947786 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53677.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.59 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 481 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNRQNGGGQR LRSARPTTIH DCALSGDLIA LQRLLKDNPS LLNERNPVMY HTPLHVSAGN GNVDIVKYLL AWTGSDKVEL EAMNTYGETP LHMAAKNGCN 101: EAAKLLLESG AFIEAKASNG MTPLHLAVWY SITAKEISTV KTLLDHNADC SAKDNEGMTP LDHLPQGQGS EKLRELLRWF LQEQRKRSAL EQCGKTKAKM 201: ELLEDELSNI VGLSELKTQL RKWAKGMLLD ERRRALGLNI GTRRPPHMAF LGNPGTGKTM VARVLGKLLN TVGILPTDKV TEVQRTDLVG EFVGHTGPKT 301: RRKIQEAEGG ILFVDEAYRL IPMQKADDKD YGLEALEEIM SVMDTGKIVV IFAGYSEPMK RVIASNEGFC RRVTKFFNFS DFSAKELAQI LHIKMNNQGE 401: DTLFYGFRLH ESCTLQEIAS LIEAETTEKQ RKEMNGGLVD TLLVNARENL DLRLSFECVD TEEICTIKLE DLEAGLRVFS Q |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)