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AT3G53860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31600.1); Has 70 Blast hits to 70 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IX4DeggNOG:ENOG410Y1DGEMBL:AL132960EMBL:CP002686
EnsemblPlants:AT3G53860EnsemblPlants:AT3G53860.1entrez:824553GeneID:824553
GO:GO:0000123Gramene:AT3G53860.1hmmpanther:PTHR13453InterPro:IPR025927
InterPro:IPR026316KEGG:ath:AT3G53860OMA:VVKEEMTPANTHER:PTHR13453
Pfam:PF13891PhylomeDB:Q9M340PIR:T45926Proteomes:UP000006548
RefSeq:NP_190954.1TAIR:AT3G53860UniGene:At.35152UniProt:Q9M340
Coordinates (TAIR10) chr3:-:19949850..19951270
Molecular Weight (calculated) 31027.00 Da
IEP (calculated) 10.16
GRAVY (calculated) -0.74
Length 281 amino acids
Sequence (TAIR10)
(BLAST)
001: MASAAKNTEQ NPFSLKPPRP PSSSNAASST AVASTSVEPQ IRNPKPSTNV LPSTSNSPIT MLQEDEILAS SSHLTRPELL RRRADNLKQL AKCYKNHYWA
101: LMEDLKAQHR DYWCKYGVSQ FKDEQNQSNK RRRLDPEGSG DKGNDGDQYA NSNSGFCMYG CKAKAMALTK YCQLHILKDS KQKLYTGCTN VINRSPAGPL
201: LCGKPTLAST VPVLCNVHYQ KAQKNVAKAL KDAGHNVSST SKPPPKLHVI VAAFVHHIQA QRKNPHKEGK LKSVVKEEMT S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)