AT1G13190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G55670.1); Has 32447 Blast hits to 17825 proteins in 1064 species: Archae - 7; Bacteria - 12227; Metazoa - 10368; Fungi - 2543; Plants - 3608; Viruses - 174; Other Eukaryotes - 3520 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:4499633..4501354 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61403.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.01 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.89 | ||||||||||||||||||||||||||||||||||||||||
| Length | 573 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTEENDYGGN QKILHQGSGT IPALADEELM GDDDEYDDLY SDVNVGESFF QAHNQPQPPA QVNTSNASLQ AQNSHVAAEP RMGIVSGGTV EGKYRNDGGH 101: NGISGPDTRS DVYPQASSFG AKGLNIDIQS NKIAQQGSTT VVLNNHGFSG NAVNVPEMPV HNSYGAPPQG AQQIPVSQMS VNPNVMMNKS PTQSFVVDNG 201: NTMLFVGELH WWTTDAEIES VLSQYGRVKE IKFFDERVSG KSKGYCQVEF YDSAAAAACK EGMNGFIFNG KACVVAFASP ETLKQMGANF TGRNQGQNQI 301: QNRRPLNEGM GRGNNNNNNM NTQNGDGGRN YGRGGFARGG QGMGNRGGAW GGAMRGRGVN NMASGSGAGP YGPGLAGPAF GGMMHPQGMM GAGGFDPTFM 401: GRGAGYGGYS GIAYPGMPHS YPGVNAMGMV GIAPHVNPAF FGTGMGTMGS SGMNGVHAAA MWSEANGGGG EEGGSEYGGY EDETQEKEEK PSRDKERATT 501: ERDWSENSGD RRHKSHREEK DSHREYKQQR DRDSDEFDRG QSSLKSRSRS RMSEDDHRSR SRDADYGKRR RGD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)