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AT2G36830.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:8508761 (1993): plant-type vacuole plant-type vacuole membrane
  • PMID:19922653 (2009): plant-type vacuole plant-type vacuole membrane
  • PMID:18242181 (2008): plant-type vacuole
  • PMID:17666025 (2007): plant-type vacuole plant-type vacuole membrane
  • PMID:16183846 (2005): plant-type vacuole
  • PMID:11844103 (2002): plant-type vacuole
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : gamma tonoplast intrinsic protein
Curator
Summary (TAIR10)
Encodes a tonoplast intrinsic protein, which functions as water channel. It has also been shown to be able to facilitate the transport of urea and hydrogen peroxide. Highly expressed in vascular tissues of the root, stem, cauline leaves and flowers but not in the apical meristems.
Computational
Description (TAIR10)
gamma tonoplast intrinsic protein (GAMMA-TIP); FUNCTIONS IN: water channel activity, urea transmembrane transporter activity; INVOLVED IN: in 6 processes; LOCATED IN: in 7 components; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: tonoplast intrinsic protein 2 (TAIR:AT3G26520.1); Has 11016 Blast hits to 10983 proteins in 2213 species: Archae - 82; Bacteria - 5238; Metazoa - 1501; Fungi - 451; Plants - 2489; Viruses - 0; Other Eukaryotes - 1255 (source: NCBI BLink).
Protein Annotations
BioGrid:3599eggNOG:COG0580eggNOG:KOG0223EMBL:AC006922
EMBL:AF370172EMBL:AY059134EMBL:AY087558EMBL:CP002685
EMBL:M84344EMBL:X54854EMBL:X63552EMBL:X72581
EMBL:Z18124EMBL:Z18771EMBL:Z26215EnsemblPlants:AT2G36830
EnsemblPlants:AT2G36830.1entrez:818255Gene3D:1.20.1080.10GeneID:818255
Genevisible:P25818GO:GO:0000326GO:GO:0005773GO:GO:0005774
GO:GO:0006833GO:GO:0009705GO:GO:0009941GO:GO:0015204
GO:GO:0015250GO:GO:0015254GO:GO:0015793GO:GO:0015840
GO:GO:0016021GO:GO:0034220GO:GO:0042807GO:GO:0071918
GO:GO:0080170Gramene:AT2G36830.1hmmpanther:PTHR19139hmmpanther:PTHR19139:SF52
HOGENOM:HOG000288286InParanoid:P25818IntAct:P25818InterPro:IPR000425
InterPro:IPR022357InterPro:IPR023271KEGG:ath:AT2G36830KO:K09873
OMA:ACLILKFPANTHER:PTHR19139PaxDb:P25818Pfam:P25818
Pfam:PF00230PhylomeDB:P25818PIR:S13718PIR:S22202
PRIDE:P25818PRINTS:PR00783PRO:PR:P25818PROSITE:PS00221
ProteinModelPortal:P25818Proteomes:UP000006548Reactome:R-ATH-1237044Reactome:R-ATH-1247673
Reactome:R-ATH-432040Reactome:R-ATH-432047RefSeq:NP_181221.1scanprosite:PS00221
SMR:P25818STRING:3702.AT2G36830.1SUPFAM:SSF81338TAIR:AT2G36830
tair10-symbols:GAMMA-TIPtair10-symbols:GAMMA-TIP1tair10-symbols:TIP1;1TCDB:1.A.8.10.3
TMHMM:TMhelixUniGene:At.25221UniGene:At.43252UniGene:At.67051
UniProt:P25818
Coordinates (TAIR10) chr2:+:15445490..15446336
Molecular Weight (calculated) 25621.30 Da
IEP (calculated) 6.51
GRAVY (calculated) 0.84
Length 251 amino acids
Sequence (TAIR10)
(BLAST)
001: MPIRNIAIGR PDEATRPDAL KAALAEFIST LIFVVAGSGS GMAFNKLTEN GATTPSGLVA AAVAHAFGLF VAVSVGANIS GGHVNPAVTF GAFIGGNITL
101: LRGILYWIAQ LLGSVVACLI LKFATGGLAV PAFGLSAGVG VLNAFVFEIV MTFGLVYTVY ATAIDPKNGS LGTIAPIAIG FIVGANILAG GAFSGASMNP
201: AVAFGPAVVS WTWTNHWVYW AGPLVGGGIA GLIYEVFFIN TTHEQLPTTD Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)