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AT4G17340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:19922653 (2009): plant-type vacuole plant-type vacuole membrane
  • PMID:10737809 (2000): plant-type vacuole
  • PMID:31975158 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : tonoplast intrinsic protein 2;2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
tonoplast intrinsic protein 2;2 (TIP2;2); FUNCTIONS IN: water channel activity; INVOLVED IN: response to salt stress, transport; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: tonoplast intrinsic protein 2;3 (TAIR:AT5G47450.1); Has 10928 Blast hits to 10884 proteins in 2182 species: Archae - 82; Bacteria - 5178; Metazoa - 1485; Fungi - 421; Plants - 2525; Viruses - 2; Other Eukaryotes - 1235 (source: NCBI BLink).
Protein Annotations
BioGrid:12739eggNOG:COG0580eggNOG:KOG0223EMBL:AF367283
EMBL:AL161546EMBL:AY056063EMBL:AY088929EMBL:CP002687
EMBL:Z18142EMBL:Z97343EnsemblPlants:AT4G17340EnsemblPlants:AT4G17340.1
entrez:827446Gene3D:1.20.1080.10GeneID:827446Genevisible:Q41975
GO:GO:0005773GO:GO:0005774GO:GO:0006833GO:GO:0009507
GO:GO:0009705GO:GO:0015250GO:GO:0015254GO:GO:0015793
GO:GO:0016021GO:GO:0034220GO:GO:0042807Gramene:AT4G17340.1
hmmpanther:PTHR19139hmmpanther:PTHR19139:SF134HOGENOM:HOG000288286InParanoid:Q41975
IntAct:Q41975InterPro:IPR000425InterPro:IPR022357InterPro:IPR023271
KEGG:ath:AT4G17340KO:K09873OMA:MVKIAFGPANTHER:PTHR19139
PaxDb:Q41975Pfam:PF00230Pfam:Q41975PhylomeDB:Q41975
PIR:F71442PRIDE:Q41975PRINTS:PR00783PRO:PR:Q41975
PROSITE:PS00221ProteinModelPortal:Q41975Proteomes:UP000006548Reactome:R-ATH-1237044
Reactome:R-ATH-1247673Reactome:R-ATH-432040Reactome:R-ATH-432047RefSeq:NP_193465.1
scanprosite:PS00221SMR:Q41975STRING:3702.AT4G17340.1SUPFAM:SSF81338
TAIR:AT4G17340tair10-symbols:DELTA-TIP2tair10-symbols:TIP2;2TIGRfam:TIGR00861
TIGRFAMs:TIGR00861TMHMM:TMhelixUniGene:At.24274UniProt:Q41975
Coordinates (TAIR10) chr4:+:9699318..9700250
Molecular Weight (calculated) 25081.60 Da
IEP (calculated) 4.50
GRAVY (calculated) 1.02
Length 250 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKIEIGSVG DSFSVASLKA YLSEFIATLL FVFAGVGSAL AFAKLTSDAA LDPAGLVAVA VAHAFALFVG VSIAANISGG HLNPAVTLGL AVGGNITVIT
101: GFFYWIAQCL GSIVACLLLV FVTNGESVPT HGVAAGLGAI EGVVMEIVVT FALVYTVYAT AADPKKGSLG TIAPIAIGFI VGANILAAGP FSGGSMNPAR
201: SFGPAVVSGD FSQIWIYWVG PLVGGALAGL IYGDVFIGSY APAPTTESYP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)