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AT2G37180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31541795 (2020): plasma membrane
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21413151 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:16635983 (2006): plasma membrane
  • PMID:15060130 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Aquaporin-like superfamily protein
Curator
Summary (TAIR10)
a member of the plasma membrane intrinsic protein PIP2. functions as aquaporin and is involved in dessication.
Computational
Description (TAIR10)
RESPONSIVE TO DESICCATION 28 (RD28); FUNCTIONS IN: water channel activity; INVOLVED IN: response to desiccation, response to water deprivation, transport, response to osmotic stress; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: shoot, root, flower, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 2 (TAIR:AT2G37170.1); Has 10809 Blast hits to 10795 proteins in 2215 species: Archae - 81; Bacteria - 5139; Metazoa - 1474; Fungi - 455; Plants - 2518; Viruses - 2; Other Eukaryotes - 1140 (source: NCBI BLink).
Protein Annotations
BioGrid:3638eggNOG:COG0580eggNOG:KOG0223EMBL:AC006260
EMBL:AY064029EMBL:AY084875EMBL:AY096701EMBL:CP002685
EMBL:D13254EnsemblPlants:AT2G37180EnsemblPlants:AT2G37180.1entrez:818294
Gene3D:1.20.1080.10GeneID:818294Genevisible:P30302GO:GO:0005773
GO:GO:0005886GO:GO:0006833GO:GO:0009414GO:GO:0009506
GO:GO:0015250GO:GO:0015254GO:GO:0015793GO:GO:0016021
GO:GO:0034220Gramene:AT2G37180.1hmmpanther:PTHR19139hmmpanther:PTHR19139:SF167
HOGENOM:HOG000288286InParanoid:P30302IntAct:P30302InterPro:IPR000425
InterPro:IPR022357InterPro:IPR023271iPTMnet:P30302KEGG:ath:AT2G37180
KO:K09872OMA:ESKPWNDPANTHER:PTHR19139PaxDb:P30302
Pfam:P30302Pfam:PF00230PhylomeDB:P30302PIR:E84789
PRIDE:P30302PRINTS:PR00783PRO:PR:P30302PROSITE:PS00221
ProteinModelPortal:P30302Proteomes:UP000006548Reactome:R-ATH-432047RefSeq:NP_181255.1
scanprosite:PS00221SMR:P30302STRING:3702.AT2G37180.1SUPFAM:SSF81338
TAIR:AT2G37180tair10-symbols:PIP2;3tair10-symbols:PIP2Ctair10-symbols:RD28
TIGRfam:TIGR00861TIGRFAMs:TIGR00861TMHMM:TMhelixUniGene:At.24327
UniGene:At.65760UniProt:P30302
Coordinates (TAIR10) chr2:+:15617779..15618937
Molecular Weight (calculated) 30430.90 Da
IEP (calculated) 7.97
GRAVY (calculated) 0.50
Length 285 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKDVEGPDG FQTRDYEDPP PTPFFDAEEL TKWSLYRAVI AEFVATLLFL YVTVLTVIGY KIQSDTKAGG VDCGGVGILG IAWAFGGMIF ILVYCTAGIS
101: GGHINPAVTF GLFLARKVSL IRAVLYMVAQ CLGAICGVGF VKAFQSSHYV NYGGGANFLA DGYNTGTGLA AEIIGTFVLV YTVFSATDPK RNARDSHVPV
201: LAPLPIGFAV FMVHLATIPI TGTGINPARS FGAAVIFNKS KPWDDHWIFW VGPFIGATIA AFYHQFVLRA SGSKSLGSFR SAANV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)