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AT3G54820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31541795 (2020): plasma membrane
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23990937 (2013): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21413151 (2011): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : plasma membrane intrinsic protein 2;5
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
plasma membrane intrinsic protein 2;5 (PIP2;5); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 2 (TAIR:AT2G37170.1); Has 10866 Blast hits to 10851 proteins in 2236 species: Archae - 80; Bacteria - 5189; Metazoa - 1483; Fungi - 451; Plants - 2536; Viruses - 2; Other Eukaryotes - 1125 (source: NCBI BLink).
Protein Annotations
BioGrid:9963eggNOG:COG0580eggNOG:KOG0223EMBL:AF370351
EMBL:AL049655EMBL:AY062981EMBL:AY084843EMBL:BT000670
EMBL:CP002686EnsemblPlants:AT3G54820EnsemblPlants:AT3G54820.1entrez:824647
Gene3D:1.20.1080.10GeneID:824647Genevisible:Q9SV31GO:GO:0005773
GO:GO:0005886GO:GO:0006833GO:GO:0009506GO:GO:0015250
GO:GO:0015254GO:GO:0015793GO:GO:0016021GO:GO:0034220
Gramene:AT3G54820.1hmmpanther:PTHR19139hmmpanther:PTHR19139:SF148HOGENOM:HOG000288286
InParanoid:Q9SV31IntAct:Q9SV31InterPro:IPR000425InterPro:IPR022357
InterPro:IPR023271iPTMnet:Q9SV31KEGG:ath:AT3G54820KO:K09872
OMA:VEICELDPANTHER:PTHR19139PaxDb:Q9SV31Pfam:PF00230
Pfam:Q9SV31PhylomeDB:Q9SV31PIR:T06738PRIDE:Q9SV31
PRINTS:PR00783PRO:PR:Q9SV31PROSITE:PS00221ProteinModelPortal:Q9SV31
Proteomes:UP000006548Reactome:R-ATH-432047RefSeq:NP_191042.1scanprosite:PS00221
SMR:Q9SV31STRING:3702.AT3G54820.1SUPFAM:SSF81338TAIR:AT3G54820
tair10-symbols:PIP2;5tair10-symbols:PIP2DTIGRfam:TIGR00861TIGRFAMs:TIGR00861
TMHMM:TMhelixUniGene:At.3117UniProt:Q9SV31
Coordinates (TAIR10) chr3:+:20302117..20303738
Molecular Weight (calculated) 30591.40 Da
IEP (calculated) 9.05
GRAVY (calculated) 0.51
Length 286 amino acids
Sequence (TAIR10)
(BLAST)
001: MTKEVVGDKR SFSGKDYQDP PPEPLFDATE LGKWSFYRAL IAEFIATLLF LYVTIMTVIG YKSQTDPALN PDQCTGVGVL GIAWAFGGMI FILVYCTAGI
101: SGGHINPAVT FGLLLARKVT LVRAVMYMVA QCLGAICGVA LVKAFQSAYF TRYGGGANGL SDGYSIGTGV AAEIIGTFVL VYTVFSATDP KRSARDSHVP
201: VLAPLPIGFA VFIVHLATIP ITGTGINPAR SLGAAIIYNK DKAWDHHWIF WVGPFAGAAI AAFYHQFVLR AGAIKALGSF RSQPHV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)