suba logo
AT3G61490.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G23500.1); Has 4119 Blast hits to 4104 proteins in 500 species: Archae - 6; Bacteria - 1446; Metazoa - 14; Fungi - 1115; Plants - 1406; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G61490-MONOMERBioCyc:ARA:GQT-2841-MONOMERBioCyc:ARA:GQT-2842-MONOMERCAZy:GH28
eggNOG:COG5434eggNOG:ENOG410IEVGEMBL:AL132962EMBL:CP002686
EnsemblPlants:AT3G61490EnsemblPlants:AT3G61490.1EnsemblPlants:AT3G61490.2EnsemblPlants:AT3G61490.3
entrez:825322Gene3D:2.160.20.10GeneID:825322GO:GO:0004650
GO:GO:0005576GO:GO:0005975GO:GO:0071555Gramene:AT3G61490.1
Gramene:AT3G61490.2Gramene:AT3G61490.3hmmpanther:PTHR31339hmmpanther:PTHR31339:SF12
HOGENOM:HOG000238076InterPro:IPR000743InterPro:IPR006626InterPro:IPR011050
InterPro:IPR012334KEGG:ath:AT3G61490OMA:EYTAISCPfam:PF00295
PhylomeDB:Q9M318PIR:T47941Proteomes:UP000006548RefSeq:NP_001190154.1
RefSeq:NP_191708.1RefSeq:NP_974473.1SMART:SM00710SMR:Q9M318
SUPFAM:SSF51126TAIR:AT3G61490UniGene:At.43625UniProt:Q9M318
Coordinates (TAIR10) chr3:+:22758439..22760137
Molecular Weight (calculated) 51941.90 Da
IEP (calculated) 6.23
GRAVY (calculated) -0.08
Length 476 amino acids
Sequence (TAIR10)
(BLAST)
001: MKNILACIVT IITLSNLITI SQGRRVSQSF ETFEYTAIIC RSHSASITEY GGVGDGKTLN TKAFQSAVDH LSQYSSEGGA QLFVPAGKWL TGSFNLTSHF
101: TLFLHKDAIL LAAQDLNEYP ILKALPSYGR GRDAAGGRFA SLIFGTNLSD VIITGNNGTI DGQGSFWWQK FHGGKLKYTR PYLIELMFSD TIQISNLTFL
201: DSPSWNIHPV YSSNIIVKGV TIIAPVKSPN TDGINPDSCT NTRIEDCYII SGDDCIAVKS GWDEYGISFG MPTKHLVIRR LTCISPYSAA IALGSEMSGG
301: IEDVRAEDIT AYQTESGVRI KTAVGRGAFV KNIYVKGMNL HTMKWVFWMT GNYKAHADSH YDPHALPEIT GINYRDIVAE NVSMAGRLEG ISGDPFTGIC
401: ISNATISMAA KHKKAIWMCS DVEGVTSGVD PKPCDLLDGQ ESETTKKKMI DGGCDFPTDV LEIDNVELKT CSYQMS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)