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AT5G19730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:15610358 (2005): extracellular region
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall, cytoplasm; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G36710.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G19730-MONOMEREC:3.1.1.11eggNOG:COG4677eggNOG:ENOG410IHQT
EMBL:AF296838EMBL:AY065431EMBL:AY096559EMBL:CP002688
EnsemblPlants:AT5G19730EnsemblPlants:AT5G19730.1entrez:832093Gene3D:2.160.20.10
GeneID:832093Genevisible:Q8VYZ3GO:GO:0005576GO:GO:0005618
GO:GO:0005737GO:GO:0030599GO:GO:0042545GO:GO:0045330
GO:GO:0045490Gramene:AT5G19730.1gramene_pathway:3.1.1.11gramene_pathway:PWY-1081
hmmpanther:PTHR31321hmmpanther:PTHR31321:SF17HOGENOM:HOG000217409InParanoid:Q8VYZ3
InterPro:IPR000070InterPro:IPR011050InterPro:IPR012334InterPro:IPR033131
KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11KEGG:ath:AT5G19730KO:K01051
OMA:DPSREMTPaxDb:Q8VYZ3Pfam:PF01095Pfam:Q8VYZ3
PhylomeDB:Q8VYZ3PRIDE:Q8VYZ3PRO:PR:Q8VYZ3PROSITE:PS00503
ProteinModelPortal:Q8VYZ3Proteomes:UP000006548RefSeq:NP_197474.1scanprosite:PS00503
SMR:Q8VYZ3STRING:3702.AT5G19730.1SUPFAM:SSF51126TAIR:AT5G19730
UniGene:At.28487UniPathway:UPA00545UniProt:Q8VYZ3
Coordinates (TAIR10) chr5:+:6670562..6673202
Molecular Weight (calculated) 42543.00 Da
IEP (calculated) 9.44
GRAVY (calculated) -0.18
Length 383 amino acids
Sequence (TAIR10)
(BLAST)
001: MPKLNSTQAP NLFLLLLVIL LCSTQTQCHT KGLRLRPRNQ KNMNTTSDRT QNPEDEFMKW VRFVGSLKHS VFKAAKNKLF PSYTLTVHKK SNKGDFTKIQ
101: DAIDSLPLIN FVRVVIKVHA GVYKEKVSIP PLKAFITIEG EGAEKTTVEW GDTAQTPDSK GNPMGTYNSA SFAVNSPFFV AKNITFRNTT PVPLPGAVGK
201: QAVALRVSAD NAAFFGCRML GAQDTLYDHL GRHYYKDCYI EGSVDFIFGN ALSLYEGCHV HAIADKLGAV TAQGRSSVLE DTGFSFVKCK VTGTGVLYLG
301: RAWGPFSRVV FAYTYMDNII LPRGWYNWGD PSREMTVFYG QYKCTGAGAN YGGRVAWARE LTDEEAKPFL SLTFIDGSEW IKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)