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AT5G13140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pollen Ole e 1 allergen and extensin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pollen Ole e 1 allergen and extensin family protein; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: Pollen Ole e 1 allergen and extensin family protein (TAIR:AT3G26960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYMUeggNOG:ENOG410YJ94EMBL:AL391711EMBL:BT004020
EMBL:BT005185EMBL:CP002688EnsemblPlants:AT5G13140EnsemblPlants:AT5G13140.1
entrez:831153GeneID:831153Gramene:AT5G13140.1hmmpanther:PTHR31614
hmmpanther:PTHR31614:SF6KEGG:ath:AT5G13140OMA:FFLPYFPPfam:PF01190
PhylomeDB:Q9FY96Proteomes:UP000006548RefSeq:NP_196818.1STRING:3702.AT5G13140.1
TAIR:AT5G13140UniGene:At.32107UniProt:Q9FY96
Coordinates (TAIR10) chr5:-:4170688..4171744
Molecular Weight (calculated) 29810.60 Da
IEP (calculated) 8.91
GRAVY (calculated) -0.32
Length 267 amino acids
Sequence (TAIR10)
(BLAST)
001: MYLPLLYLLF LASCLTHQAL GRGRGRPSPE GSLDPSSRIT VVGVVYCDTC SINTFSRQSY FLQGVEVHVT CRFKASSPKT AEEVNISVNR TTNRSGVYKL
101: EIPHVDGIDC VDGIAISSQC SAKILKTSSD DNGGCSIPVF QTATNEVSIK SKQDRVCIYS LSALSYKPPH KNTSLCGNGG KKHHRKDEKV EKKFRDSKFF
201: WPYLAPYWFP WPYPDLPPLP TLPPFPSFPF PSLPFGNPNL ALPAFDWKNP VTWIPYLPRF PPGDHNP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)