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AT4G12970.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23686240 (2013): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : stomagen
Curator
Summary (TAIR10)
Encodes a cysteine-rich peptide, a secretory factor that is produced in the mesophyll cells and acts on the epidermis to increase stomatal formation. Its mature form is a 45-aa peptide with three intramolecular disulfide bonds. It is proposed that STOMAGEN increases stomatal number by competing with two negative regulators of stomatal density, EPF1 and EPF2, possibly through direct interaction with the receptor-like protein TMM.
Computational
Description (TAIR10)
STOMAGEN (STOMAGEN); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: stomatal complex patterning, regulation of stomatal complex development, positive regulation of stomatal complex development, cell-cell signaling; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; Has 29 Blast hits to 29 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:826909eggNOG:ENOG410J2R8eggNOG:ENOG410Z51EEMBL:AK175876
EMBL:AL079349EMBL:AL161535EMBL:CP002687EnsemblPlants:AT4G12970
EnsemblPlants:AT4G12970.1entrez:826909GeneID:826909Genevisible:Q9SV72
GO:GO:0007267GO:GO:0010052GO:GO:0010374GO:GO:0010375
GO:GO:0019901GO:GO:0048046GO:GO:2000038GO:GO:2000123
Gramene:AT4G12970.1hmmpanther:PTHR37239hmmpanther:PTHR37239:SF1HOGENOM:HOG000077498
InParanoid:Q9SV72InterPro:IPR031753KEGG:ath:AT4G12970OMA:HMIGSTA
PaxDb:Q9SV72PDB:2LIYPDBsum:2LIYPfam:PF16851
Pfam:Q9SV72PhylomeDB:Q9SV72PIR:T10199PRIDE:Q9SV72
PRO:PR:Q9SV72ProteinModelPortal:Q9SV72Proteomes:UP000006548RefSeq:NP_193033.1
SMR:Q9SV72STRING:3702.AT4G12970.1TAIR:AT4G12970tair10-symbols:EPFL9
tair10-symbols:STOMAGENTMHMM:TMhelixUniGene:At.43880UniProt:Q9SV72
Coordinates (TAIR10) chr4:-:7586244..7586798
Molecular Weight (calculated) 11840.60 Da
IEP (calculated) 9.39
GRAVY (calculated) -0.26
Length 102 amino acids
Sequence (TAIR10)
(BLAST)
001: MKHEMMNIKP RCITIFFLLF ALLLGNYVVQ ASRPRSIENT VSLLPQVHLL NSRRRHMIGS TAPTCTYNEC RGCRYKCRAE QVPVEGNDPI NSAYHYRCVC
101: HR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)