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AT3G23760.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:12154131 (2002): peroxisome
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: transferases, transferring glycosyl groups (TAIR:AT4G14100.1); Has 108 Blast hits to 104 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVPSeggNOG:ENOG4111MP0EMBL:AY088284EMBL:CP002686
EnsemblPlants:AT3G23760EnsemblPlants:AT3G23760.1entrez:821958GeneID:821958
GO:GO:0005773Gramene:AT3G23760.1hmmpanther:PTHR33880hmmpanther:PTHR33880:SF3
HOGENOM:HOG000240559KEGG:ath:AT3G23760OMA:FYYTLDAPhylomeDB:Q8L9Q7
Proteomes:UP000006548RefSeq:NP_566739.1STRING:3702.AT3G23760.1TAIR:AT3G23760
UniGene:At.21852UniProt:Q8L9Q7
Coordinates (TAIR10) chr3:-:8562965..8564640
Molecular Weight (calculated) 22738.40 Da
IEP (calculated) 5.94
GRAVY (calculated) -0.17
Length 194 amino acids
Sequence (TAIR10)
(BLAST)
001: MVLKPIHSFI VILLLVLSVG DKISAGTEPE KEPVPAVWPE QFHALMLMNK SGSLEIVDLW YDWVNGRNFN IIQKQLGKLT YDLEWNNGTS FYYTLDASKT
101: CRTVHFEVGI LRPNWLDGAK YMGQRHVNGF LCNVWEKVEF LWYYEDVVTK RPVQWIFYTG REAHVMTFEV GAVLEDEKWQ APVYCFHNEK KEVQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)