AT1G53250.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.991 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53800.1); Has 11909 Blast hits to 7704 proteins in 757 species: Archae - 51; Bacteria - 1338; Metazoa - 4550; Fungi - 987; Plants - 464; Viruses - 24; Other Eukaryotes - 4495 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:19857468..19859156 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43035.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.89 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.03 | ||||||||||||||||||||||||||||
| Length | 371 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLNLGLSME MKCTFQSTRA PFQCAWWFPN SIYWTLKEPI VLRIPNSLAS LRSIRHLELK SVGSLYNVFE IHRKEVNSSL LEVKAMNKDT EADSDSDRKI 101: KEEERRRKIG LANKGKVPWN KGRKHSEDTR RRIKQRTIEA LTNPKVRKKM SDHQQPHSNE TKEKIRASVK QVWAERSRSK RLKEKFMSSW SENIAEAARK 201: GGSGEAELDW DSYEKIKQDF SSEQLQLAEE KARAKEQTKM IAKEAAKART EKMRRAAEKK KEREEKDRRE GKIRKPKQER ENPTIASRSK LKKRLTKIHK 301: KKTSLGKIAI GTDRVVSVAA KLEKLDLDLI RKERTRGDIS LADQIQAAKN QRGSDVLSRF GLFAMKSMDF D |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)